RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 C9orf66Q5T8R8 295 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 TRAT1Q6PIZ9 186 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 GAPTQ8N292 157 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 PGLYRP3Q96LB9 341 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 OR14A2Q96R54 314 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 CHCHD3Q9NX63 227 aaKnown RBP11.05□□□□□ -0.64
SNHG1-213ENST00000540725 PEX16Q9Y5Y5 336 aa11.05□□□□□ -0.64
SNHG1-213ENST00000540725 TRBV5-7A0A0A0MS05 114 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 A0A1W2PPK0 400 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 BAG2O95816 211 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 IGF1P05019 195 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 SLC2A2P11168 524 aaPredicted RBP11.04□□□□□ -0.64
SNHG1-213ENST00000540725 LSAMPQ13449 338 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 MED21Q13503 144 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 AWAT2Q6E213 333 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 ZNF485Q8NCK3 441 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 C4orf3Q8WVX3 66 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 TMEM80Q96HE8 168 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 KCTD7Q96MP8 289 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 PRR25Q96S07 402 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 SELENOIQ9C0D9 397 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 BANF2Q9H503 90 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 ZNF107Q9UII5 783 aaPredicted RBP11.04□□□□□ -0.64
SNHG1-213ENST00000540725 ZNF580Q9UK33 172 aa11.04□□□□□ -0.64
SNHG1-213ENST00000540725 PNMA8CA0A1B0GUJ8 204 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 FAM90A10PA6NDY2 464 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 FAM90A7PA6NKC0 464 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 FAM90A23PA8MXZ1 464 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 SEC14L6B5MCN3 397 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 LANCL1O43813 399 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 CA11O75493 328 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 SC5DO75845 299 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MAS1P04201 325 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 NHLRC4P0CG21 123 aaPredicted RBP11.03□□□□□ -0.64
SNHG1-213ENST00000540725 OR5H8P0DN80 308 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MGMTP16455 207 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MYF6P23409 242 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 PSMB8P28062 276 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 ADARB1P78563 741 aaKnown RBP11.03□□□□□ -0.64
SNHG1-213ENST00000540725 FHL3Q13643 280 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MMDQ15546 238 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 STEAP3Q658P3 488 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 CYGBQ8WWM9 190 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 CYYR1Q96J86 154 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 Q96M66 194 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 TAF9BQ9HBM6 251 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 OR2S2Q9NQN1 319 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 LSM4Q9Y4Z0 139 aaKnown RBP11.03□□□□□ -0.64
SNHG1-213ENST00000540725 UBE2QL1A1L167 161 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 CRTAPO75718 401 aaPredicted RBP11.03□□□□□ -0.64
SNHG1-213ENST00000540725 GLAP06280 429 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 FUT3P21217 361 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 ECI1P42126 302 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 TAS2R43P59537 309 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 GNMTQ14749 295 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MORN2Q502X0 79 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 SIGIRRQ6IA17 410 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 LYPD6Q86Y78 171 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 CDH26Q8IXH8 852 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MYOZ3Q8TDC0 251 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 DERL3Q96Q80 235 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 MBNL3Q9NUK0 354 aaKnown RBP11.03□□□□□ -0.64
SNHG1-213ENST00000540725 SCOCQ9UIL1 159 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 U3KQK5 164 aa11.03□□□□□ -0.64
SNHG1-213ENST00000540725 PDCD6O75340 191 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 PPP1CCP36873 323 aaKnown RBP11.02□□□□□ -0.65
SNHG1-213ENST00000540725 CAPGP40121 348 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 ST3GAL4Q11206 333 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 TTC23Q5W5X9 447 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 C5orf24Q7Z6I8 188 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 ZNF554Q86TJ5 538 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 SETD9Q8NE22 299 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 OR11H1Q8NG94 326 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 OR52L2PQ8NGH6 319 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 GGHQ92820 318 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 CHCHD6Q9BRQ6 235 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 ABHD14AQ9BUJ0 271 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 MRPL20Q9BYC9 149 aaKnown RBP11.02□□□□□ -0.65
SNHG1-213ENST00000540725 KCNIP1Q9NZI2 227 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 JPT1Q9UK76 154 aa11.02□□□□□ -0.65
SNHG1-213ENST00000540725 PPIFP30405 207 aaKnown RBP11.01□□□□□ -0.65
SNHG1-213ENST00000540725 ACTBP60709 375 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 DOC2BQ14184 412 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 ZNF260Q3ZCT1 412 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 NKAPLQ5M9Q1 402 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 NKAIN3Q8N8D7 197 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 MRPL30Q8TCC3 161 aaKnown RBP11.01□□□□□ -0.65
SNHG1-213ENST00000540725 FAM46BQ96A09 425 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 NABP2Q9BQ15 211 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 KLK15Q9H2R5 256 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 GNB4Q9HAV0 340 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 WSB1Q9Y6I7 421 aa11.01□□□□□ -0.65
SNHG1-213ENST00000540725 EFCAB10A6NFE3 127 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 G3V318 75 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 ATP6V0E1O15342 81 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 HLA-DRB1P01911 266 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 CELP19835 753 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 CNTFRP26992 372 aa11□□□□□ -0.65
SNHG1-213ENST00000540725 KIAA0141Q14154 515 aaPredicted RBP11□□□□□ -0.65
SNHG1-213ENST00000540725 LRRC36Q1X8D7 754 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms