RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 NCOR1O75376 2440 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 MRPL33O75394 65 aaKnown RBP10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 NGFP01138 241 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 GLIPR1P48060 266 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 ZNF266Q14584 549 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 LRTM2Q8N967 370 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 OR2M7Q8NG81 312 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 CLDND2Q8NHS1 167 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 RPUSD4Q96CM3 377 aaKnown RBP10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 CABLES2Q9BTV7 478 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 REPIN1Q9BWE0 567 aaKnown RBP10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 PRDM14Q9GZV8 571 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 PLEKHF2Q9H8W4 249 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 RPRMQ9NS64 109 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 ZNF391Q9UJN7 358 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 WASF3Q9UPY6 502 aa10.72□□□□□ -0.69
SFSWAP-208ENST00000539506 SMCO3A2RU48 225 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 FAM166BA8MTA8 275 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 TRDCB7Z8K6 153 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 HS3ST1O14792 307 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 HSPA12AO43301 675 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 CD33P20138 364 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 MALLQ13021 153 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 SELENOHQ8IZQ5 122 aaKnown RBP10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 GTF3AQ92664 365 aaKnown RBP10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 TMEM45BQ96B21 275 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 IGKV3D-15A0A087WSY6 115 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 A0A1B0GUS0 222 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 C5orf49A4QMS7 147 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 LILRA1O75019 489 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 MAGEA5P43359 124 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 GPM6AP51674 278 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 P2RY6Q15077 328 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 C3AR1Q16581 482 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 DBX2Q6ZNG2 339 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 ELOVL1Q9BW60 279 aa10.71□□□□□ -0.69
SFSWAP-208ENST00000539506 HERPUD1Q15011 391 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 C1QL4Q86Z23 238 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 GATAD1Q8WUU5 269 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 SLC25A31Q9H0C2 315 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 PLK3Q9H4B4 646 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 MTCH1Q9NZJ7 389 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 KIAA1456Q9P272 454 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 MED13Q9UHV7 2174 aa10.71□□□□□ -0.7
SFSWAP-208ENST00000539506 LMO1P25800 156 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 PRDX4Q13162 271 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 TMEM211Q6ICI0 200 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 LFNGQ8NES3 379 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 Q8NFD4 153 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 RDH5Q92781 318 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 LAMP3Q9UQV4 416 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 DNAJC13O75165 2243 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 EGR1P18146 543 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 SSX2Q16385 188 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 VASH2Q86V25 355 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 EXTL1Q92935 676 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 TMEM222Q9H0R3 208 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 OPA3Q9H6K4 179 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 ZNF552Q9H707 407 aaPredicted RBP10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 TMED3Q9Y3Q3 217 aa10.7□□□□□ -0.7
SFSWAP-208ENST00000539506 TSTD3H0UI37 97 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ARL16Q0P5N6 197 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ZNF787Q6DD87 383 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 Q6ZRM9 215 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 TMPRSS7Q7RTY8 843 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ZNF664Q8N3J9 261 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 LYRM2Q9NU23 88 aaPredicted RBP10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 LAMA5O15230 3695 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 IGKV1-6A0A0C4DH72 117 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 UCP3P55916 312 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 COL10A1Q03692 680 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 OR8G2PQ6IF36 304 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 C20orf204Q6ZNR8 217 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 OR4X1Q8NH49 305 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 TTTY12Q9BZ98 90 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 BOKQ9UMX3 212 aaPredicted RBP10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 SVILO95425 2214 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 A0A1W2PPQ1 181 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ARGFXA6NJG6 315 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 RPL36A-HNRNPH2H7BZ11 118 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 SYNGR1O43759 233 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 COL8A2P25067 703 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 OR8G1Q15617 311 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ZNF726P1Q15940 193 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 FAM90A2PQ658T7 463 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 LINC00696Q6ZRV3 163 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ZDHHC23Q8IYP9 409 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 C1orf87Q8N0U7 546 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 CCDC71LQ8N9Z2 235 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 FAM173AQ9BQD7 235 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 ARRDC1-AS1Q9H2J1 176 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 C11orf1Q9H5F2 150 aa10.69□□□□□ -0.7
SFSWAP-208ENST00000539506 SS18L1O75177 396 aaPredicted RBP10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 PITX3O75364 302 aa10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 PTBP3O95758 552 aaKnown RBP10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 NAPSAO96009 420 aa10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 PSG2P11465 335 aa10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 PAX9P55771 341 aa10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 NUFIP2Q7Z417 695 aaKnown RBP10.68□□□□□ -0.7
SFSWAP-208ENST00000539506 REC114Q7Z4M0 266 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms