RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 HSD52Q0P140 79 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 SMAGPQ0VAQ4 97 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TMEM267Q0VDI3 215 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZP4Q12836 540 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OLIG2Q13516 323 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 GNMTQ14749 295 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 PDGFRLQ15198 375 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ACKR1Q16570 336 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ALKBH6Q3KRA9 238 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TDRG1Q3Y452 100 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ACSM3Q53FZ2 586 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 SYT14P1Q58G82 188 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TMEM128Q5BJH2 165 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 RAET1LQ5VY80 246 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 SLC8B1Q6J4K2 584 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 MRPL54Q6P161 138 aaKnown RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF343Q6P1L6 599 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 NIPAL3Q6P499 406 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 KCTD18Q6PI47 426 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 OPN5Q6U736 354 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 UNQ5815/PRO19632Q6UWF5 114 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TOMM20LQ6UXN7 152 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 C12orf54Q6X4T0 127 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 Q6ZN92 141 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 Q6ZRG5 221 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OLIG3Q7RTU3 272 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 DPY19L4Q7Z388 723 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 SCD5Q86SK9 330 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 HAPLN4Q86UW8 402 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF429Q86V71 674 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 C17orf64Q86WR6 236 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TMEM173Q86WV6 379 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 MSRB3Q8IXL7 192 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 C1orf174Q8IYL3 243 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF101Q8IZC7 436 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF567Q8N184 647 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 GPD1LQ8N335 351 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 LINC00471Q8N535 108 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 C2orf73Q8N5S3 287 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 ACVR1CQ8NER5 493 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TSTD1Q8NFU3 115 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 GPR32P1Q8NGA4 272 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR5AU1Q8NGC0 362 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR52R1Q8NGF1 315 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR4D11Q8NGI4 311 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR5A1Q8NGJ0 315 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR52E1Q8NGJ3 308 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR52B4Q8NGK2 314 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR1B1Q8NGR6 318 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 VN1R17PQ8TDU5 208 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 DOK4Q8TEW6 326 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF418Q8TF45 676 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 UBTD2Q8WUN7 234 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNRF4Q8WWF5 429 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 DCUN1D4Q92564 292 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 NDRG1Q92597 394 aaKnown RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 RERGQ96A58 199 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 PTX4Q96A99 478 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 GALMQ96C23 342 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZMYND19Q96E35 227 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 SEH1LQ96EE3 360 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 IMP4Q96G21 291 aaKnown RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR10C1Q96KK4 312 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 CAPNS2Q96L46 248 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 GPR82Q96P67 336 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TSSK3Q96PN8 268 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 OR6C1Q96RD1 312 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 NIPSNAP3BQ9BS92 247 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 TIMM29Q9BSF4 260 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 RSG1Q9BU20 258 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 DPY30Q9C005 99 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 MAP1LC3BQ9GZQ8 125 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 IKZF5Q9H5V7 419 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 RERGLQ9H628 205 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ALG9Q9H6U8 611 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 UBE2ZQ9H832 354 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 PATZ1Q9HBE1 687 aaKnown RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 LRTM1Q9HBL6 345 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 POPDC3Q9HBV1 291 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 SLC25A37Q9NYZ2 338 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 KIAA1456Q9P272 454 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 IL36AQ9UHA7 158 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF107Q9UII5 783 aaPredicted RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 ERG28Q9UKR5 140 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 SLC7A7Q9UM01 511 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 PSG8Q9UQ74 426 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 B3GALT5Q9Y2C3 310 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 LSM4Q9Y4Z0 139 aaKnown RBP2.08□□□□□ -2.08
SKA3-207ENST00000536239 YIPF1Q9Y548 306 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ETV7Q9Y603 341 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 STYXL1Q9Y6J8 313 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ANKRD36A6QL64 1941 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 NCKAP5O14513 1909 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 NRXN2Q9P2S2 1712 aa2.08□□□□□ -2.08
SKA3-207ENST00000536239 ZNF106Q9H2Y7 1883 aaKnown RBP2.07□□□□□ -2.08
SKA3-207ENST00000536239 ATG2AQ2TAZ0 1938 aa2.07□□□□□ -2.08
SKA3-207ENST00000536239 HEATR5AQ86XA9 2040 aa2.07□□□□□ -2.08
SKA3-207ENST00000536239 CCDC88CQ9P219 2028 aa2.07□□□□□ -2.08
SKA3-207ENST00000536239 A0A0J9YY10 115 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms