RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RAB9BQ9NP90 201 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 C1RLQ9NZP8 487 aa12.16□□□□□ -0.46
CPSF1-208ENST00000532560 A0A0A6YYD4 124 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 UBE2QL1A1L167 161 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 TOR1AO14656 332 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 NFYBP25208 207 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 DYNLT3P51808 116 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 RAG2P55895 527 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 SSX2Q16385 188 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 UTF1Q5T230 341 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 HES5Q5TA89 166 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 LIAT1Q6ZQX7 453 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 NR2C2APQ86WQ0 139 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 OR52M1Q8NGK5 317 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 RFESDQ8TAC1 157 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 PIFOQ8TCI5 191 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 CCDC107Q8WV48 283 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 SULT4A1Q9BR01 284 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 MMP28Q9H239 520 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 MBNL3Q9NUK0 354 aaKnown RBP12.15□□□□□ -0.46
CPSF1-208ENST00000532560 DPM3Q9P2X0 92 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 TRAPPC2LQ9UL33 140 aa12.15□□□□□ -0.46
CPSF1-208ENST00000532560 TMEM272A0A1B0GTI8 110 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 FABP12A6NFH5 140 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 FOXI3A8MTJ6 420 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 C12orf77C9JDV5 145 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 F2RL2O00254 374 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 BLVRBP30043 206 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 PRRX1P54821 245 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 RELBQ01201 579 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 FAM189A2Q15884 450 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 C2orf76Q3KRA6 126 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 TMEM30BQ3MIR4 351 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 DHRS7BQ6IAN0 325 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 FAM131AQ6UXB0 335 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 C6orf201Q7Z4U5 140 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 TPRA1Q86W33 373 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 OR4F5Q8NH21 305 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 OR4K15Q8NH41 348 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 MRPL30Q8TCC3 161 aaKnown RBP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 TAF15Q92804 592 aaKnown RBP eCLIP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 ARL11Q969Q4 196 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 CYYR1Q96J86 154 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 AMMECR1Q9Y4X0 333 aaPredicted RBP12.14□□□□□ -0.47
CPSF1-208ENST00000532560 HILPDAQ9Y5L2 63 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 MMP24Q9Y5R2 645 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 ANK2Q01484 3957 aa12.14□□□□□ -0.47
CPSF1-208ENST00000532560 A0A1B0GUS0 222 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 NOTOA8MTQ0 251 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 LEUTXA8MZ59 168 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 BUB1B-PAK6H3BSN5 160 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 J3QR06 171 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 SPINT2O43291 252 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 TMEM127O75204 238 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 HLA-DQB1P01920 261 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 IL7P13232 177 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 CEACAM3P40198 252 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 LOXL3P58215 753 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 ZNF79Q15937 498 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 LTC4SQ16873 150 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 Q3ZCU0 254 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 PLA1AQ53H76 456 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 LAX1Q8IWV1 398 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 DIRAS2Q96HU8 199 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 LIN7BQ9HAP6 207 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 RAB18Q9NP72 206 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 PLEKHJ1Q9NW61 149 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 GFOD1Q9NXC2 390 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 RAB22AQ9UL26 194 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 TBC1D24Q9ULP9 559 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 HSF4Q9ULV5 492 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 PSG11Q9UQ72 335 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 TCF19Q9Y242 345 aa12.13□□□□□ -0.47
CPSF1-208ENST00000532560 OOSP1A8MZH6 123 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 LY6LH3BQJ8 138 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 SDCBPO00560 298 aaPredicted RBP12.12□□□□□ -0.47
CPSF1-208ENST00000532560 SOCS1O15524 211 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 NAPSAO96009 420 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 HBZP02008 142 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 RCC1P18754 421 aaPredicted RBP12.12□□□□□ -0.47
CPSF1-208ENST00000532560 RAB6AP20340 208 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 MDKP21741 143 aaPredicted RBP12.12□□□□□ -0.47
CPSF1-208ENST00000532560 ARHGDIBP52566 201 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 LY6EQ16553 131 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 TPTE2P1Q5T6R2 138 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 C3orf56Q8N813 242 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 C8orf31Q8N9H6 132 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 OR56B1Q8NGI3 324 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 SOSTQ9BQB4 213 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 FAAP24Q9BTP7 215 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 MIXL1Q9H2W2 232 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 BEX1Q9HBH7 125 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 RABL2AQ9UBK7 228 aaPredicted RBP12.12□□□□□ -0.47
CPSF1-208ENST00000532560 RABL2BQ9UNT1 228 aa12.12□□□□□ -0.47
CPSF1-208ENST00000532560 POM121CA8CG34 1229 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 CHST1O43916 411 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 IGHV3-7P01780 117 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 VEGFCP49767 419 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 GNG10P50151 68 aa12.11□□□□□ -0.47
CPSF1-208ENST00000532560 MXD1Q05195 221 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms