RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 BIRC8Q96P09 236 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TSPAN32Q96QS1 320 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 RASL11BQ9BPW5 248 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TBL1YQ9BQ87 522 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TBL1XR1Q9BZK7 514 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 PACSIN2Q9UNF0 486 aaPredicted RBP2.47□□□□□ -2.01
CD44-235ENST00000532339 SYNE2Q8WXH0 6885 aaKnown RBP2.46□□□□□ -2.02
CD44-235ENST00000532339 TRAV25A0A0B4J276 109 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 MANBAO00462 879 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 FGFR1OPO95684 399 aaKnown RBP2.46□□□□□ -2.02
CD44-235ENST00000532339 IGLV1-47P01700 117 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 STAG3L3P0CL85 134 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 IGHV3-43DP0DP04 118 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 SLC1A1P43005 524 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 SSR2P43308 183 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 SH3BGRP55822 239 aaPredicted RBP2.46□□□□□ -2.02
CD44-235ENST00000532339 ACTA2P62736 377 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 BLCAPP62952 87 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 ACTG2P63267 376 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 ACTC1P68032 377 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 ACTA1P68133 377 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PAX5Q02548 391 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 FOXF1Q12946 379 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PSG7Q13046 419 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 TFDP2Q14188 446 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 SGCAQ16586 387 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 LRRC10Q5BKY1 277 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 MBOAT1Q6ZNC8 495 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 SSX9Q7RTT3 188 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 VMO1Q7Z5L0 202 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 MDP1Q86V88 176 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 NPBQ8NG41 125 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 OR52R1Q8NGF1 315 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 OR10G9Q8NGN4 311 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 OR1N2Q8NGR9 330 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 OR10R2Q8NGX6 335 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 OR8U1Q8NH10 309 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PIGXQ8TBF5 258 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 CAPSLQ8WWF8 208 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 GEMIN6Q8WXD5 167 aaKnown RBP2.46□□□□□ -2.02
CD44-235ENST00000532339 ZHX1-C8orf76Q96EF9 292 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PKNOX2Q96KN3 472 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PRRC1Q96M27 445 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 PPP1R2P1Q96PQ5 205 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 KPTNQ9Y664 436 aa2.46□□□□□ -2.02
CD44-235ENST00000532339 NUP214P35658 2090 aaPredicted RBP2.46□□□□□ -2.02
CD44-235ENST00000532339 TNCP24821 2201 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 E5RI56 91 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 F6UB75 175 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 M0R2N4 97 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 LGALS9O00182 355 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 PLPP1O14494 284 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 NDUFAB1O14561 156 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ZNF861PO60384 105 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 FSTL3O95633 263 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OXTP01178 125 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 INSP01308 110 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 IFNA14P01570 189 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 SERPINA5P05154 406 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 C8GP07360 202 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 GIPP09681 153 aaPredicted RBP2.45□□□□□ -2.02
CD44-235ENST00000532339 CPMP14384 443 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 SERPINB5P36952 375 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 CDKN1BP46527 198 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 RGS6P49758 472 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 RAB13P51153 203 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 XKP51811 444 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 CRISP1P54107 249 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ARF6P62330 175 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 MAB21L1Q13394 359 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 AQP6Q13520 282 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 C10orf99Q6UWK7 81 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 TMPPEQ6ZT21 453 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ZNF695Q8IW36 515 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ATP6V1C2Q8NEY4 427 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OR6Q1Q8NGQ2 317 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OR2G3Q8NGZ4 309 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OR5B3Q8NH48 314 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ZNF502Q8TBZ5 544 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 PIFOQ8TCI5 191 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 MARCH1Q8TCQ1 289 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 C11orf40Q8WZ69 217 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 RORBQ92753 470 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OR2M2Q96R28 347 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 OSBPL10Q9BXB5 764 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 ELOVL6Q9H5J4 265 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 PARVBQ9HBI1 364 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 C20orf96Q9NUD7 363 aaPredicted RBP2.45□□□□□ -2.02
CD44-235ENST00000532339 AHSPQ9NZD4 102 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 MTCH1Q9NZJ7 389 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 MAT2BQ9NZL9 334 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 TRAPPC4Q9Y296 219 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 TANC2Q9HCD6 1990 aa2.45□□□□□ -2.02
CD44-235ENST00000532339 A0A0B4J2A0 478 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 KBTBD11-OT1A0A1B0GTJ5 212 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 SUPT3HB4E1H0 165 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 H3BSH0 61 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 PANO1I0J062 215 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 L7N2F9 121 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 PEX7O00628 323 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms