RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ARL11Q969Q4 196 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 MGAT4CQ9UBM8 478 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 SHPKQ9UHJ6 478 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 KCNIP3Q9Y2W7 256 aa17.6■□□□□ 0.41
VPS28-212ENST00000530836 CRYM-AS1A6NIL9 109 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 BOLA2-SMG1P6H3BVE0 249 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 PI3P19957 117 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 S100GP29377 79 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 PIGPP57054 158 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 FAM216BQ8N7L0 139 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 TPRX1Q8N7U7 411 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 COQ8AQ8NI60 647 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 PERPQ96FX8 193 aa17.59■□□□□ 0.41
VPS28-212ENST00000530836 ZNF436Q9C0F3 470 aaPredicted RBP17.59■□□□□ 0.41
VPS28-212ENST00000530836 TRGV10A0A0A0MS01 117 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 CXCL3P19876 107 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 LUMP51884 338 aaPredicted RBP17.58■□□□□ 0.41
VPS28-212ENST00000530836 ATP5J2P56134 94 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 LRRC10Q5BKY1 277 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 CMTM1Q8IZ96 169 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 SLC5A7Q9GZV3 580 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 SLC2A9Q9NRM0 540 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 SLC25A10Q9UBX3 287 aaPredicted RBP17.58■□□□□ 0.41
VPS28-212ENST00000530836 LPAR3Q9UBY5 353 aa17.58■□□□□ 0.41
VPS28-212ENST00000530836 TEX13DA0A0J9YY54 714 aaPredicted RBP17.58■□□□□ 0.4
VPS28-212ENST00000530836 A8MV72 311 aaPredicted RBP17.58■□□□□ 0.4
VPS28-212ENST00000530836 C15orf65H3BRN8 121 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 GPR31O00270 319 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 NDUFB3O43676 98 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 RP2O75695 350 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 SLC22A5O76082 557 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 IFNA2P01563 188 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 COL8A2P25067 703 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 CEACAM6P40199 344 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 RND3P61587 244 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 MEF2CQ06413 473 aaPredicted RBP17.58■□□□□ 0.4
VPS28-212ENST00000530836 TMEM30BQ3MIR4 351 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 LIN54Q6MZP7 749 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 C5orf24Q7Z6I8 188 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 UXS1Q8NBZ7 420 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 OR1L1Q8NH94 360 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 RTN4IP1Q8WWV3 396 aaPredicted RBP17.58■□□□□ 0.4
VPS28-212ENST00000530836 CORO2AQ92828 525 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 TIMD4Q96H15 378 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 FYTTD1Q96QD9 318 aaKnown RBP17.58■□□□□ 0.4
VPS28-212ENST00000530836 TMEM246Q9BRR3 403 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 RDH8Q9NYR8 311 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 OR1A1Q9P1Q5 309 aa17.58■□□□□ 0.4
VPS28-212ENST00000530836 hADV38S2A0JD32 116 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 ADAM20O43506 726 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 NDUFS7O75251 213 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 RPS2P15880 293 aaKnown RBP17.57■□□□□ 0.4
VPS28-212ENST00000530836 HLA-GP17693 338 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 GNRHRP30968 328 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 SUPT4H1P63272 117 aaKnown RBP17.57■□□□□ 0.4
VPS28-212ENST00000530836 ZFP69Q49AA0 526 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 OR10V1Q8NGI7 309 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 SECTM1Q8WVN6 248 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 GALNT14Q96FL9 552 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 AKR1E2Q96JD6 320 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 ITGB1BP2Q9UKP3 347 aa17.57■□□□□ 0.4
VPS28-212ENST00000530836 IGHV4-39P01824 125 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 GIPP09681 153 aaPredicted RBP17.56■□□□□ 0.4
VPS28-212ENST00000530836 SELLP14151 372 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 DAOP14920 347 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 SSTR5P35346 364 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 EIF2B2P49770 351 aaKnown RBP17.56■□□□□ 0.4
VPS28-212ENST00000530836 CASTOR1Q8WTX7 329 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 RAB1CQ92928 201 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 NAA60Q9H7X0 242 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 JPT1Q9UK76 154 aa17.56■□□□□ 0.4
VPS28-212ENST00000530836 MAST4O15021 2626 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 OR2A4O95047 310 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 F12P00748 615 aaPredicted RBP17.55■□□□□ 0.4
VPS28-212ENST00000530836 IGHV2-70P01814 119 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 CGB3P0DN86 165 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 CGB7P0DN87 165 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 NDUFB7P17568 137 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 EFNA4P52798 201 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 KCTD9Q7L273 389 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 OR2A7Q96R45 310 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 SUCNR1Q9BXA5 334 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 CHODLQ9H9P2 273 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 BARX1Q9HBU1 254 aaPredicted RBP17.55■□□□□ 0.4
VPS28-212ENST00000530836 OR2S2Q9NQN1 319 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 TAS2R3Q9NYW6 316 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 UBE2J1Q9Y385 318 aaPredicted RBP17.55■□□□□ 0.4
VPS28-212ENST00000530836 LINC00312Q9Y6C7 94 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 ARID1AO14497 2285 aa17.55■□□□□ 0.4
VPS28-212ENST00000530836 MAP1AP78559 2803 aaPredicted RBP17.55■□□□□ 0.4
VPS28-212ENST00000530836 A0A1B0GW55 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 ZNF729A6NN14 1252 aaPredicted RBP17.54■□□□□ 0.4
VPS28-212ENST00000530836 F2RL2O00254 374 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 GOSR2O14653 212 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 B3GALNT1O75752 331 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L2P0CJ85 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L3P0CJ86 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L4P0CJ87 422 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L5P0CJ88 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L6P0CJ89 424 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms