RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 A0A096LPE4 126 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 A0A1W2PPQ1 181 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 A0A1W2PPZ6 126 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 M0R143 59 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 HSPB6O14558 160 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 TGOLN2O43493 480 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 RPL29P47914 159 aaKnown RBP12.14□□□□□ -0.47
USP48-213ENST00000529637 HERPUD1Q15011 391 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 ZNF818PQ6ZRF7 136 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 FAM185AQ8N0U4 392 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 ZNF295-AS1Q8N0V1 137 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 OSR2Q8N2R0 312 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 OR51G1Q8NGK1 321 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 HMGB3O15347 200 aaKnown RBP12.14□□□□□ -0.47
USP48-213ENST00000529637 SYNGR3O43761 229 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 SRD5A2P31213 254 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 IDH3GP51553 393 aaPredicted RBP12.14□□□□□ -0.47
USP48-213ENST00000529637 ID3Q02535 119 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 MALLQ13021 153 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 COA6Q5JTJ3 125 aaKnown RBP12.14□□□□□ -0.47
USP48-213ENST00000529637 PRDM6Q9NQX0 595 aa12.14□□□□□ -0.47
USP48-213ENST00000529637 A0A0G2JRQ6 117 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 LAMTOR5O43504 91 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 SCGB1D1O95968 90 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 CCL2P13500 99 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 CRYGSP22914 178 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 CLDN15P56746 228 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 H1FOOQ8IZA3 346 aaPredicted RBP12.13□□□□□ -0.47
USP48-213ENST00000529637 CCDC71LQ8N9Z2 235 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 ZNF286AQ9HBT8 521 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 TAAR3PQ9P1P4 343 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 POLR3KQ9Y2Y1 108 aaPredicted RBP12.13□□□□□ -0.47
USP48-213ENST00000529637 RNF115Q9Y4L5 304 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 A0A1W2PR80 420 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 ERVFC1-1P60608 527 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 HIST1H3AP68431 136 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 NMSQ5H8A3 153 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 LHFPL2Q6ZUX7 228 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 CALHM1Q8IU99 346 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 GAPTQ8N292 157 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 OR2V1Q8NHB1 315 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 RPUSD4Q96CM3 377 aaKnown RBP12.13□□□□□ -0.47
USP48-213ENST00000529637 C10orf35Q96D05 121 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 SMIM7Q9BQ49 75 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 VAX2Q9UIW0 290 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 MUC3AQ02505 3323 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 TRAV1-1A0A0B4J248 108 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 IGKV1D-13A0A0B4J2D9 117 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 CST2P09228 141 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 IGKV1-13P0DP09 117 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 OR10J5Q8NHC4 309 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 TMEM56Q96MV1 263 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 PYGO2Q9BRQ0 406 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 Q9N2K0 584 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 TMEM56-RWDD3S4R434 201 aa12.13□□□□□ -0.47
USP48-213ENST00000529637 PPP5D1E7EU14 171 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 NUPR1O60356 82 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 RAB4AP20338 218 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 GALR1P47211 349 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 UCP3P55916 312 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 ARL16Q0P5N6 197 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 SPINK14Q6IE38 97 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 FOXL2NBQ6ZUU3 175 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 SF3B5Q9BWJ5 86 aaKnown RBP12.12□□□□□ -0.47
USP48-213ENST00000529637 OR2H1Q9GZK4 316 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 PPP1R14DQ9NXH3 145 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 DIDO1Q9BTC0 2240 aaKnown RBP12.12□□□□□ -0.47
USP48-213ENST00000529637 LRRC3CA6NJW4 275 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 PCP4P48539 62 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 CYB561P49447 251 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 DAZAP2Q15038 168 aaPredicted RBP12.12□□□□□ -0.47
USP48-213ENST00000529637 TDRG1Q3Y452 100 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 MYPOPQ86VE0 399 aaPredicted RBP12.12□□□□□ -0.47
USP48-213ENST00000529637 CPT1CQ8TCG5 803 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 WNT5BQ9H1J7 359 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 HIPK2Q9H2X6 1198 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 PRSS50Q9UI38 385 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 GOLT1BQ9Y3E0 138 aa12.12□□□□□ -0.47
USP48-213ENST00000529637 MAP1BP46821 2468 aaKnown RBP12.12□□□□□ -0.47
USP48-213ENST00000529637 B4E171 279 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 CYC1P08574 325 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 TSPAN7P41732 249 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 PDLIM4P50479 330 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 DCAF12Q5T6F0 453 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 DOCK11Q5JSL3 2073 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 DLEU1O43261 78 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 MRPL33O75394 65 aaKnown RBP12.11□□□□□ -0.47
USP48-213ENST00000529637 B3GALT5-AS1P59052 145 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 GGNQ86UU5 652 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 TMEM256Q8N2U0 113 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 ZNF611Q8N823 705 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 KCNE4Q8WWG9 221 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 PRRG4Q9BZD6 226 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 CTDSP1Q9GZU7 261 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 OR6C6A6NF89 314 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 ZNF716A6NP11 495 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 CER1O95813 267 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 NPBWR2P48146 333 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 PCBD1P61457 104 aa12.11□□□□□ -0.47
USP48-213ENST00000529637 RPL23P62829 140 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms