RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CMSS1Q9BQ75 279 aaKnown RBP8.21□□□□□ -1.1
VPS28-204ENST00000526054 PECRQ9BY49 303 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 C16orf95Q9H693 158 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 C12orf4Q9NQ89 552 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 RHBDL2Q9NX52 303 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 AK3Q9UIJ7 227 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 MGAT4AQ9UM21 535 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 SPATA2Q9UM82 520 aa8.21□□□□□ -1.1
VPS28-204ENST00000526054 TBL2Q9Y4P3 447 aaKnown RBP8.21□□□□□ -1.1
VPS28-204ENST00000526054 A0A075B6Q4 140 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 A0A087X0M5 115 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 TRBV6-6A0A0A6YYG2 114 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 A0A1B0GX30 115 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 SERPINE3A8MV23 424 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 C12orf77C9JDV5 145 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 C15orf65H3BRN8 121 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 RAB27BO00194 218 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 SDCBPO00560 298 aaPredicted RBP8.2□□□□□ -1.1
VPS28-204ENST00000526054 MFNGO00587 321 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 TOR1AO14656 332 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 NAPSAO96009 420 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 CD3GP09693 182 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 HIST1H1DP16402 221 aaKnown RBP8.2□□□□□ -1.1
VPS28-204ENST00000526054 GDNFP39905 211 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 PRRX1P54821 245 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 TMEM50BP56557 158 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 LTC4SQ16873 150 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 MOGAT2Q3SYC2 334 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 PLAC9Q5JTB6 97 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 MINOS1Q5TGZ0 78 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 C1QL4Q86Z23 238 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 ABHD12Q8N2K0 398 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 OR52M1Q8NGK5 317 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 OR5H6Q8NGV6 325 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 OR5R1Q8NH85 324 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 OR9G1Q8NH87 305 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 MCFD2Q8NI22 146 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 RFESDQ8TAC1 157 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 CREB3L1Q96BA8 519 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 SLIRPQ9GZT3 109 aaKnown RBP8.2□□□□□ -1.1
VPS28-204ENST00000526054 TAF9BQ9HBM6 251 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 ZNF286AQ9HBT8 521 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 MBNL3Q9NUK0 354 aaKnown RBP8.2□□□□□ -1.1
VPS28-204ENST00000526054 MINOS1-NBL1R4GNA1 71 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 A3GALT2U3KPV4 340 aa8.2□□□□□ -1.1
VPS28-204ENST00000526054 A0A0A6YYH2 397 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 FAM172BPA6NC97 362 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 A6NJ64 397 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 F2RL2O00254 374 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 TSPAN9O75954 239 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 HBZP02008 142 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 CSF1P09603 554 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 GNB3P16520 340 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 RCC1P18754 421 aaPredicted RBP8.19□□□□□ -1.1
VPS28-204ENST00000526054 HTR1DP28221 377 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 ARFRP1Q13795 201 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 UBE2NLQ5JXB2 153 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 BAIAP2L2Q6UXY1 529 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 PRR18Q8N4B5 295 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 BEND2Q8NDZ0 799 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 FAM110DQ8TAY7 271 aaPredicted RBP8.19□□□□□ -1.1
VPS28-204ENST00000526054 UBALD1Q8TB05 177 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 ACOT12Q8WYK0 555 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 SLC25A38Q96DW6 304 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 CYYR1Q96J86 154 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 TSC22D3Q99576 134 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.19□□□□□ -1.1
VPS28-204ENST00000526054 DIABLOQ9NR28 239 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 GFOD1Q9NXC2 390 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 GNG12Q9UBI6 72 aa8.19□□□□□ -1.1
VPS28-204ENST00000526054 AMMECR1Q9Y4X0 333 aaPredicted RBP8.19□□□□□ -1.1
VPS28-204ENST00000526054 H3BUX3 64 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 GSTP1P09211 210 aaKnown RBP8.18□□□□□ -1.1
VPS28-204ENST00000526054 TALDO1P37837 337 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 CEACAM3P40198 252 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 GNG10P50151 68 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 HLA-DRB3P79483 266 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 PITPNAQ00169 270 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 HMGN3Q15651 99 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 HLA-DRB5Q30154 266 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 Q3ZCU0 254 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 MZT2AQ6P582 158 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 ZNF880Q6PDB4 577 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 LINC00299Q6ZSB3 139 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 SAMD12Q8N8I0 201 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 OR4P4Q8NGL7 312 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 OR1L1Q8NH94 360 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 GALMQ96C23 342 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 MALSU1Q96EH3 234 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 HDHD3Q9BSH5 251 aaPredicted RBP8.18□□□□□ -1.1
VPS28-204ENST00000526054 C6orf62Q9GZU0 229 aaPredicted RBP8.18□□□□□ -1.1
VPS28-204ENST00000526054 NXF2Q9GZY0 626 aaKnown RBP8.18□□□□□ -1.1
VPS28-204ENST00000526054 MMP28Q9H239 520 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 JPT1Q9UK76 154 aa8.18□□□□□ -1.1
VPS28-204ENST00000526054 IGHV3-43A0A0B4J1X8 118 aa8.17□□□□□ -1.1
VPS28-204ENST00000526054 LEUTXA8MZ59 168 aa8.17□□□□□ -1.1
VPS28-204ENST00000526054 J3QR06 171 aa8.17□□□□□ -1.1
VPS28-204ENST00000526054 RGS11O94810 467 aa8.17□□□□□ -1.1
VPS28-204ENST00000526054 IGLV1-47P01700 117 aa8.17□□□□□ -1.1
VPS28-204ENST00000526054 FCGR3AP08637 254 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms