RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 TRAV1-1A0A0B4J248 108 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 IGHV1-69-2A0A0G2JMI3 117 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 A0A0J9YY10 115 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 KRTAP23-1A1A580 65 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 VSTM2BA6NLU5 285 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 TMEM212A6NML5 194 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CEACAM18A8MTB9 384 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ANKRD66B4E2M5 251 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 H3BMH7 237 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 KLRC4-KLRK1H3BQV0 150 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 J3KTA2 159 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 J3QLW9 94 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SIRPB1O00241 398 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 FFAR1O14842 300 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 TAPBPO15533 448 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ZNF264O43296 627 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 LRATO95237 230 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ONECUT2O95948 504 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OPN1SWP03999 348 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 LCATP04180 440 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 THY1P04216 161 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 REG1AP05451 166 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CELA2AP08217 269 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR5G3P0C626 314 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR12D1P0DN82 309 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ZNF19P17023 458 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ANOS1P23352 680 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 GLRA1P23415 457 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 RPL12P30050 165 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 PYCR1P32322 319 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SOAT1P35610 550 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 AKR1C3P42330 323 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SLC6A12P48065 614 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 PPOXP50336 477 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CNN1P51911 297 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 HNRNPA3P51991 378 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 FGF8P55075 233 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 ATP5IP56385 69 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 TMEM33P57088 247 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 IL13RA2Q14627 380 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ATXN7L3Q14CW9 347 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 EXT1Q16394 746 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 PRSS8Q16651 343 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 LRRC37A5PQ49AS3 106 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ZNF506Q5JVG8 444 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 PRAMEF20Q5VT98 475 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SAMD13Q5VXD3 122 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 FAM71F2Q6NXP2 309 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 MRPL54Q6P161 138 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 FAM151BQ6UXP7 276 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 TMEM64Q6YI46 380 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 COX15Q7KZN9 410 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 LHFPL4Q7Z7J7 247 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 NIT1Q86X76 327 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SGPP2Q8IWX5 399 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CLECL1Q8IZS7 167 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 BATF2Q8N1L9 274 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 RPRMLQ8N4K4 120 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 IQCF1Q8N6M8 205 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 TSEN15Q8WW01 171 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 AQP3Q92482 292 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 RNASE6Q93091 150 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 MAL2Q969L2 176 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ADIPOR1Q96A54 375 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SLAMF6Q96DU3 332 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SPACA9Q96E40 222 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 SLC35A4Q96G79 324 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 REEP6Q96HR9 211 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 PGAM5Q96HS1 289 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ABHD14BQ96IU4 210 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR10C1Q96KK4 312 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SNX22Q96L94 193 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ALKBH3Q96Q83 286 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 HIST1H2AAQ96QV6 131 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CCL19Q99731 98 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 MACROD1Q9BQ69 325 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CHRNA10Q9GZZ6 450 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR52D1Q9H346 318 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 ZNF703Q9H7S9 590 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 GPR35Q9HC97 309 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR2S2Q9NQN1 319 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SIRT3Q9NTG7 399 aaPredicted RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 TMEM160Q9NX00 188 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 MRPL15Q9P015 296 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 COPS7AQ9UBW8 275 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 OR5V1Q9UGF6 321 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 NAT8Q9UHE5 227 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 LAMTOR2Q9Y2Q5 125 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 MRPS28Q9Y2Q9 187 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 AK6Q9Y3D8 172 aaKnown RBP4.31□□□□□ -1.72
CD44-218ENST00000525469 TMEM14AQ9Y6G1 99 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 SCN3AQ9NY46 2000 aa4.31□□□□□ -1.72
CD44-218ENST00000525469 A0A1B0GU03 582 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 OR6C6A6NF89 314 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 OR5B21A6NL26 309 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 ZNF814B7Z6K7 855 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 EEF1E1-BLOC1S5C9J1V9 151 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 CORTO00230 105 aa4.3□□□□□ -1.72
CD44-218ENST00000525469 SLC17A2O00624 439 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms