RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ZNF703Q9H7S9 590 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-213ENST00000523488 HES4Q9HCC6 221 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 PTPRBP23467 1997 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 C2orf16Q68DN1 1984 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 TRAV30A0A087WSZ9 112 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 CRISP2P16562 243 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 BMP5P22003 454 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 FBXW4P57775 412 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 PRR27Q6MZM9 219 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 FIGLAQ6QHK4 219 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 LHFPL4Q7Z7J7 247 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 LIN37Q96GY3 246 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-213ENST00000523488 HDHD3Q9BSH5 251 aaPredicted RBP7.19□□□□□ -1.26
CSMD1-213ENST00000523488 INSL6Q9Y581 213 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 CNOT1A5YKK6 2376 aaKnown RBP7.19□□□□□ -1.26
CSMD1-213ENST00000523488 TRBV6-6A0A0A6YYG2 114 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 EDDM13A0A1B0GTR0 161 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 CA3P07451 260 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 RRADP55042 308 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 Q6ZVH6 145 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 CYYR1Q96J86 154 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 RSG1Q9BU20 258 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 SLC35D1Q9NTN3 355 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 WDR87Q6ZQQ6 2873 aa7.19□□□□□ -1.26
CSMD1-213ENST00000523488 MS4A18H0YCH9 400 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 NUPR1O60356 82 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 GYPAP02724 150 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 HOXC12P31275 282 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 FMODQ06828 376 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 GPM6BQ13491 265 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 LRRC75BQ2VPJ9 315 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 MS4A18Q3C1V0 323 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 CXorf66Q5JRM2 361 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TMEM42Q69YG0 159 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 Q8N7P7 452 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 OR11L1Q8NGX0 322 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 LRRC3BQ96PB8 259 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 RNF2Q99496 336 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 PLA2G3Q9NZ20 509 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 LAMA3Q16787 3333 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 C17orf105B2RV13 164 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 NPIPB11E5RHQ5 1161 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 H0YGG7 62 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 HMGB3O15347 200 aaKnown RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 CHST1O43916 411 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 P0C879 139 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 IGLC2P0DOY2 106 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 IGLC3P0DOY3 106 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 FCGR2AP12318 317 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TNFSF4P23510 183 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 NTSR1P30989 418 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 RPS18P62269 152 aaKnown RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 MEF2BQ02080 365 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 RNFT1Q5M7Z0 435 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 CDCP2Q5VXM1 449 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 SELENOHQ8IZQ5 122 aaKnown RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 DEFB119Q8N690 84 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TCTEX1D1Q8N7M0 179 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 OR4P4Q8NGL7 312 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 MRPL30Q8TCC3 161 aaKnown RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 ADIPOR1Q96A54 375 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TAAR3PQ9P1P4 343 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TPRP12270 2363 aaKnown RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 ADAM20O43506 726 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 WDR1O75083 606 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 OR10J4P0C629 311 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 DRD3P35462 400 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 REG1BP48304 166 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 PRTGQ2VWP7 1150 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 ZNF468Q5VIY5 522 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 C1orf174Q8IYL3 243 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 RAB1CQ92928 201 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 IL19Q9UHD0 177 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 SH3BGRL2Q9UJC5 107 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TBX21Q9UL17 535 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 CACNA1EQ15878 2313 aa7.18□□□□□ -1.26
CSMD1-213ENST00000523488 EP300Q09472 2414 aaPredicted RBP7.18□□□□□ -1.26
CSMD1-213ENST00000523488 TRBV9A0A0B4J1U6 114 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A10PA6NDY2 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A18PA6NE21 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A16PA6NEW6 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FRG2CA6NGY1 282 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A20PA6NIJ5 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A8PA6NJQ4 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A7PA6NKC0 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A22PA8MWA6 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A12PA8MX19 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A5PA8MXJ8 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A23PA8MXZ1 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 HRKO00198 91 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 IGKV3-11P04433 115 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A15PP0C7V4 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A13PP0C7W8 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A14PP0C7W9 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 FAM90A24PP0C7X0 464 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 IL3RAP26951 378 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 BLKP51451 505 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 OR5D13Q8NGL4 314 aa7.17□□□□□ -1.26
CSMD1-213ENST00000523488 BAHD1Q8TBE0 780 aaPredicted RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms