RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 OR10V1Q8NGI7 309 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 OR1L1Q8NH94 360 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 PHYHIPQ92561 330 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 TAF9BQ9HBM6 251 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 OR2S2Q9NQN1 319 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 JPT1Q9UK76 154 aa13.8□□□□□ -0.2
DDX41-217ENST00000515562 UBE2QL1A1L167 161 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 NUDT19A8MXV4 375 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 H0YHG0 523 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 ACSM3Q53FZ2 586 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 CT45A1Q5HYN5 189 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 RBM48Q5RL73 367 aaKnown RBP13.79□□□□□ -0.2
DDX41-217ENST00000515562 GLT8D1Q68CQ7 371 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 TEX38Q6PEX7 206 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 ETV3LQ6ZN32 361 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 CT45A3Q8NHU0 189 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 DPF1Q92782 380 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 RASL11BQ9BPW5 248 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 DCLRE1BQ9H816 532 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 LINC00527Q9UJ94 153 aa13.79□□□□□ -0.2
DDX41-217ENST00000515562 LANCL1O43813 399 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 RRP9O43818 475 aaKnown RBP13.78□□□□□ -0.2
DDX41-217ENST00000515562 MPIG6BO95866 241 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 VHLP40337 213 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 THBS3P49746 956 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 ZNF134P52741 427 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 SPHARQ15513 63 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 NKAPLQ5M9Q1 402 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 UNQ9370/PRO34162Q6UXP9 181 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 MRPL41Q8IXM3 137 aaKnown RBP13.78□□□□□ -0.2
DDX41-217ENST00000515562 KLHL30-AS1Q8NEE0 82 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 MRPL30Q8TCC3 161 aaKnown RBP13.78□□□□□ -0.2
DDX41-217ENST00000515562 NEDD4LQ96PU5 975 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 S1PR3Q99500 378 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 ABHD14AQ9BUJ0 271 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 TMED9Q9BVK6 235 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 TMEM59Q9BXS4 323 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 PLSCR3Q9NRY6 295 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 SCN3BQ9NY72 215 aa13.78□□□□□ -0.2
DDX41-217ENST00000515562 PTGES3LE9PB15 166 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 RGS11O94810 467 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 HTD2P86397 168 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 LSAMPQ13449 338 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 INSL4Q14641 139 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 MORN2Q502X0 79 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 C1orf100Q5SVJ3 147 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 C6orf141Q5SZD1 244 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 FAM27D1Q5T7N8 215 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 C8orf86Q6ZUL3 223 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 LRRTM1Q86UE6 522 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 ZNF695Q8IW36 515 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 FAM71E2Q8N5Q1 922 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 MCRIP2Q9BUT9 160 aaKnown RBP13.77□□□□□ -0.21
DDX41-217ENST00000515562 LSM2Q9Y333 95 aaKnown RBP13.77□□□□□ -0.21
DDX41-217ENST00000515562 LRRC42Q9Y546 428 aa13.77□□□□□ -0.21
DDX41-217ENST00000515562 LINC01548A6NM66 108 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 ZNF736B4DX44 427 aaPredicted RBP13.76□□□□□ -0.21
DDX41-217ENST00000515562 VSIG8P0DPA2 414 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 CHATP28329 748 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 SOX6P35712 828 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 MYCNOSP40205 109 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 GP2P55259 537 aaKnown RBP13.76□□□□□ -0.21
DDX41-217ENST00000515562 RPS27AP62979 156 aaKnown RBP13.76□□□□□ -0.21
DDX41-217ENST00000515562 EGFEM1PQ0D2K5 195 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 GNMTQ14749 295 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 MED22Q15528 200 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 PNLIPRP3Q17RR3 467 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 HSD17B12Q53GQ0 312 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 KCNG3Q8TAE7 436 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 GALMQ96C23 342 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 ZNF580Q9UK33 172 aa13.76□□□□□ -0.21
DDX41-217ENST00000515562 UCHL1P09936 223 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 HTR2CP28335 458 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 PPP1CCP36873 323 aaKnown RBP13.75□□□□□ -0.21
DDX41-217ENST00000515562 FOXE3Q13461 319 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 CXorf66Q5JRM2 361 aaPredicted RBP13.75□□□□□ -0.21
DDX41-217ENST00000515562 LY6G6FQ5SQ64 297 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 CEACAM19Q7Z692 300 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 OR6M1Q8NGM8 313 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 UFD1Q92890 307 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 P2RX4Q99571 388 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 SULT4A1Q9BR01 284 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 ABRACLQ9P1F3 81 aa13.75□□□□□ -0.21
DDX41-217ENST00000515562 SLC22A1O15245 554 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 YPEL1O60688 119 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 BPNT1O95861 308 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 ELANEP08246 267 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 OR5H8P0DN80 308 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 SRMP19623 302 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 VDAC1P21796 283 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 MMDQ15546 238 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 HMGN3Q15651 99 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 OR10K2Q6IF99 312 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 C18orf65Q6ZTR6 163 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 MOB1BQ7L9L4 216 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 C6orf201Q7Z4U5 140 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 RNF152Q8N8N0 203 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 OR2AK2Q8NG84 335 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 OR52L2PQ8NGH6 319 aa13.74□□□□□ -0.21
DDX41-217ENST00000515562 YPEL2Q96QA6 119 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms