RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	ZNF93	P35789	620 aa	Predicted RBP	12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	SOX2	P48431	317 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	SYT6	Q5T7P8	510 aa	Predicted RBP	12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	LIN54	Q6MZP7	749 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	PRR18	Q8N4B5	295 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	MINDY2	Q8NBR6	621 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	OR4C12	Q96R67	309 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	ZNF251	Q9BRH9	671 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	ANKRD60	Q9BZ19	345 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	TOLLIP	Q9H0E2	274 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	TRAPPC2L	Q9UL33	140 aa		12.16	□□□□□ -0.46
LMNA-223	ENST00000515459	NBR2	O15453	112 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	ZNF780A	O75290	641 aa	Predicted RBP	12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	HBZ	P02008	142 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	IGHV4-30-4	P0DP06	118 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	CNTFR	P26992	372 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	BLVRB	P30043	206 aa	Predicted RBP	12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	VEGFC	P49767	419 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	GBX2	P52951	348 aa	Predicted RBP	12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	PITPNA	Q00169	270 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	C6orf183	Q5T699	404 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	DDI2	Q5TDH0	399 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	CENPN	Q96H22	339 aa	Predicted RBP	12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	RITA1	Q96K30	269 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	TMEM138	Q9NPI0	162 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	TPSG1	Q9NRR2	321 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	ERVK13-1	Q9NX77	482 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	ERGIC3	Q9Y282	383 aa		12.15	□□□□□ -0.46
LMNA-223	ENST00000515459	BIRC6	Q9NR09	4857 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	IGHV4OR15-8	A0A075B7B6	117 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459		A0A087WW49	117 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459		A0A1W2PN81	502 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	SAC3D1	A6NKF1	404 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	MCRIP1	C9JLW8	97 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	LGALS1	P09382	135 aa	Known RBP	12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	GTF2F2	P13984	249 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	CHRNA7	P36544	502 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	PPP3R1	P63098	170 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	ECSCR	Q19T08	205 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	C5orf64	Q2M2E5	130 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	TRAT1	Q6PIZ9	186 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	LYPD6	Q86Y78	171 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	OR4K15	Q8NH41	348 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	OR1L1	Q8NH94	360 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	RGP1	Q92546	391 aa	Predicted RBP	12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	TMEM106A	Q96A25	262 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	CST11	Q9H112	138 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	SPACA1	Q9HBV2	294 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	KIAA1456	Q9P272	454 aa		12.14	□□□□□ -0.47
LMNA-223	ENST00000515459	NKX1-2	Q9UD57	310 aa	Predicted RBP	12.14	□□□□□ -0.47
LMNA-223	ENST00000515459		A8MZ25	164 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	SOX15	O60248	233 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	FADS2	O95864	444 aa	Known RBP	12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	SLC22A6	Q4U2R8	563 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	MORN2	Q502X0	79 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	SGPP2	Q8IWX5	399 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459		Q8N1Y9	231 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	TCTEX1D1	Q8N7M0	179 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	NPB	Q8NG41	125 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	GPR148	Q8TDV2	347 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	FLYWCH2	Q96CP2	140 aa	Known RBP	12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	OR2S2	Q9NQN1	319 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	C19orf73	Q9NVV2	129 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	ETAA1	Q9NY74	926 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	AASS	Q9UDR5	926 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	FOXA2	Q9Y261	457 aa	Predicted RBP	12.13	□□□□□ -0.47
LMNA-223	ENST00000515459	ORC6	Q9Y5N6	252 aa		12.13	□□□□□ -0.47
LMNA-223	ENST00000515459		A0A1W2PP11	408 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	HSPA12A	O43301	675 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	HSPB1	P04792	205 aa	Known RBP	12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	RCC1	P18754	421 aa	Predicted RBP	12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	BDKRB2	P30411	391 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	GTF2A1	P52655	376 aa	Predicted RBP	12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	GPR176	Q14439	515 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	C19orf54	Q5BKX5	351 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	ODF3L1	Q8IXM7	274 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	GAPT	Q8N292	157 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	CASTOR1	Q8WTX7	329 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	NABP2	Q9BQ15	211 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	SPATA25	Q9BR10	227 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	ABHD14A	Q9BUJ0	271 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	ELOVL1	Q9BW60	279 aa		12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	MRPL20	Q9BYC9	149 aa	Known RBP	12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	RCC2	Q9P258	522 aa	Known RBP	12.12	□□□□□ -0.47
LMNA-223	ENST00000515459	NDUFA3	O95167	84 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	ALPL	P05186	524 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	CRIP2	P52943	208 aa	Predicted RBP	12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	ADARB1	P78563	741 aa	Known RBP	12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	C1orf146	Q5VVC0	180 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	ZNF660	Q6AZW8	331 aa	Predicted RBP	12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	RAB12	Q6IQ22	244 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	PYHIN1	Q6K0P9	492 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	HAPLN4	Q86UW8	402 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	ZNF184	Q99676	751 aa	Predicted RBP	12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	TAF9B	Q9HBM6	251 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	STUB1	Q9UNE7	303 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	FBXO7	Q9Y3I1	522 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	STARD9	Q9P2P6	4700 aa		12.11	□□□□□ -0.47
LMNA-223	ENST00000515459	ARPC1B	O15143	372 aa	Known RBP	12.1	□□□□□ -0.47
LMNA-223	ENST00000515459	CA11	O75493	328 aa		12.1	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms