RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PHYHD1Q5SRE7 291 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF837Q96EG3 531 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PLXNA4Q9HCM2 1894 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 COLCA2A8K830 154 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PGA5P0DJD9 388 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 KRTDAPP60985 99 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 HIST1H3AP68431 136 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 QRFPP83859 136 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 ABHD5Q8WTS1 349 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 PLXND1Q9Y4D7 1925 aa7.25□□□□□ -1.25
LIMCH1-216ENST00000512820 EFNA2O43921 213 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 LYZL6O75951 148 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 HAND1O96004 215 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM157CP0CG43 387 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 GLIPR1P48060 266 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 UBALD2Q8IYN6 164 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 SLC35E1Q96K37 410 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 TUBA4BQ9H853 241 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 CLN8Q9UBY8 286 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 FZR1Q9UM11 496 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 CLDN16Q9Y5I7 305 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 DBX1A6NMT0 343 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 NDUFB7P17568 137 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 ADCYAP1P18509 176 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 ALKBH6Q3KRA9 238 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 RIPPLY2Q5TAB7 128 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 DNM1P46Q6ZS02 220 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 CISD2Q8N5K1 135 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 AKIRIN1Q9H9L7 192 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 RNF122Q9H9V4 155 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 PARD6AQ9NPB6 346 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 SLC35D1Q9NTN3 355 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 AURKAIP1Q9NWT8 199 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 DMRT1Q9Y5R6 373 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 TANC1Q9C0D5 1861 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 RTTNQ86VV8 2226 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 PMS2P1A4D2B8 440 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 ENSAO43768 121 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 TNFSF15O95150 251 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 MMP7P09237 267 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 RPS23P62266 143 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 IL22RA2Q969J5 263 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 SYNGR3O43761 229 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 CRYAAP02489 173 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 GYPAP02724 150 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 FGF5P12034 268 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 COX6A1P12074 109 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 CCKARP32238 428 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 RPL29P47914 159 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF506Q5JVG8 444 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 KDF1Q8NAX2 398 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 DNASE2BQ8WZ79 361 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 POM121Q96HA1 1249 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 OR4C12Q96R67 309 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 TINAGQ9UJW2 476 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 SSUH2Q9Y2M2 353 aa7.24□□□□□ -1.25
LIMCH1-216ENST00000512820 FRMPD3Q5JV73 1810 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SRSF10O75494 262 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 IGHV3-13P01766 116 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 IGHV3-7P01780 117 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 APOA2P02652 100 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SRP19P09132 144 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 TRGC1P0CF51 173 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 RAB4AP20338 218 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 MEF2BQ02080 365 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 CSRP2Q16527 193 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 OR2M7Q8NG81 312 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 R3HDM4Q96D70 268 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 BSCL2Q96G97 398 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 CISD1Q9NZ45 108 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SPINK4O60575 86 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 HOXA6P31267 233 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 OR2Z1Q8NG97 314 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 RHOVQ96L33 236 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 PRDM14Q9GZV8 571 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SMOC1Q9H4F8 434 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 WFDC1Q9HC57 220 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SCN8AQ9UQD0 1980 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 AHCTF1Q8WYP5 2266 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 hCG_38984A0A1B0GV85 526 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 OOEPA6NGQ2 149 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 PATE3B3GLJ2 98 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 FCN1O00602 326 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 RTL8BQ17RB0 113 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 MYPOPQ86VE0 399 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 CALHM1Q8IU99 346 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 FADS6Q8N9I5 356 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 ZBTB34Q8NCN2 500 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 H1FXQ92522 213 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 TAF15Q92804 592 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SARAFQ96BY9 339 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF524Q96C55 264 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 ABHD14AQ9BUJ0 271 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 VAMP8Q9BV40 100 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 PROCRQ9UNN8 238 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 COL4A4P53420 1690 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 ZIC3O60481 467 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 CTSSP25774 331 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SSTP61278 116 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 SUMO1P63165 101 aaKnown RBP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms