RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RAB6AP20340 208 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 RAB7AP51149 207 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 EFNB2P52799 333 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 TMEM50BP56557 158 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 Q3ZCU0 254 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 FAM53AQ6NSI3 398 aaPredicted RBP12.81□□□□□ -0.36
LIME1-209ENST00000494776 MOB1BQ7L9L4 216 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 C8orf31Q8N9H6 132 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 OR2T6Q8NHC8 308 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 IL1F10Q8WWZ1 152 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 RAB3CQ96E17 227 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 AKR1E2Q96JD6 320 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 CMSS1Q9BQ75 279 aaKnown RBP12.81□□□□□ -0.36
LIME1-209ENST00000494776 OCSTAMPQ9BR26 566 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 CENPOQ9BU64 300 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 ATG5Q9H1Y0 275 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 RNF167Q9H6Y7 350 aa12.81□□□□□ -0.36
LIME1-209ENST00000494776 RANBP3Q9H6Z4 567 aaPredicted RBP12.81□□□□□ -0.36
LIME1-209ENST00000494776 A0A075B6Q4 140 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 AIREO43918 545 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 RGS11O94810 467 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 NAPSAO96009 420 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 GAPDHP04406 335 aaKnown RBP12.8□□□□□ -0.36
LIME1-209ENST00000494776 LPLP06858 475 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 CD3GP09693 182 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 FAM106CPP0CH98 169 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 KIR2DS4P43632 304 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 ARSJQ5FYB0 599 aaPredicted RBP12.8□□□□□ -0.36
LIME1-209ENST00000494776 SFXN4Q6P4A7 337 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 LINC00311Q8N616 119 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 OR52L2PQ8NGH6 319 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 OR10R2Q8NGX6 335 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 WFDC12Q8WWY7 111 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 HDHD3Q9BSH5 251 aaPredicted RBP12.8□□□□□ -0.36
LIME1-209ENST00000494776 C12orf4Q9NQ89 552 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 JPT1Q9UK76 154 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 MGAT4AQ9UM21 535 aa12.8□□□□□ -0.36
LIME1-209ENST00000494776 FOXI3A8MTJ6 420 aaPredicted RBP12.79□□□□□ -0.36
LIME1-209ENST00000494776 HSD17B6O14756 317 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 TIMM23O14925 209 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 CLEC2LP0C7M8 214 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 REG1BP48304 166 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 HTD2P86397 168 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 DIAPH2-AS1Q14236 149 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 HES1Q14469 280 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 HMGN3Q15651 99 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 MOGAT2Q3SYC2 334 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 MORN2Q502X0 79 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 PLAC9Q5JTB6 97 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 IDNKQ5T6J7 187 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 C16orf82Q7Z2V1 217 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 C5orf24Q7Z6I8 188 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 MOB3BQ86TA1 216 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 OR8H3Q8N146 312 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 DRAM1Q8N682 238 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 OR56B4Q8NH76 319 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 PTX4Q96A99 478 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 PRSS22Q9GZN4 317 aa12.79□□□□□ -0.36
LIME1-209ENST00000494776 TRBV6-6A0A0A6YYG2 114 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 SLC31A2O15432 143 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 SNRPBP14678 240 aaKnown RBP12.78□□□□□ -0.36
LIME1-209ENST00000494776 GNB3P16520 340 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 PPP1CCP36873 323 aaKnown RBP12.78□□□□□ -0.36
LIME1-209ENST00000494776 ZNF816Q0VGE8 651 aaPredicted RBP12.78□□□□□ -0.36
LIME1-209ENST00000494776 GNMTQ14749 295 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 CT45A1Q5HYN5 189 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 ZNF880Q6PDB4 577 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 SLC25A48Q6ZT89 311 aaKnown RBP12.78□□□□□ -0.36
LIME1-209ENST00000494776 LYG1Q8N1E2 194 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 CT45A3Q8NHU0 189 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 YIPF6Q96EC8 236 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 SLC25A33Q9BSK2 321 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 SIGLEC9Q9Y336 463 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 NBEAL1Q6ZS30 2694 aa12.78□□□□□ -0.36
LIME1-209ENST00000494776 IGHV1-3A0A0C4DH29 117 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 A0A1W2PPI3 338 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 HSPA12AO43301 675 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 YPEL1O60688 119 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 PEX14O75381 377 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 SNRNP70P08621 437 aaKnown RBP12.77□□□□□ -0.37
LIME1-209ENST00000494776 ZNF134P52741 427 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 PROK1P58294 105 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 LSM3P62310 102 aaKnown RBP12.77□□□□□ -0.37
LIME1-209ENST00000494776 SRSF4Q08170 494 aaKnown RBP12.77□□□□□ -0.37
LIME1-209ENST00000494776 ARFRP1Q13795 201 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 STEAP3Q658P3 488 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 THNSL2Q86YJ6 484 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 ZNF439Q8NDP4 499 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 SGMS2Q8NHU3 365 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 RBM14Q96PK6 669 aaKnown RBP12.77□□□□□ -0.37
LIME1-209ENST00000494776 YPEL2Q96QA6 119 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 ABHD14AQ9BUJ0 271 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 Q9N2K0 584 aa12.77□□□□□ -0.37
LIME1-209ENST00000494776 TRIM64CA6NLI5 447 aa12.76□□□□□ -0.37
LIME1-209ENST00000494776 RAB27BO00194 218 aa12.76□□□□□ -0.37
LIME1-209ENST00000494776 OR2F2O95006 317 aa12.76□□□□□ -0.37
LIME1-209ENST00000494776 HIST1H1DP16402 221 aaKnown RBP12.76□□□□□ -0.37
LIME1-209ENST00000494776 TMEM11P17152 192 aa12.76□□□□□ -0.37
LIME1-209ENST00000494776 TALDO1P37837 337 aa12.76□□□□□ -0.37
LIME1-209ENST00000494776 HLA-DRB3P79483 266 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms