RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HAVCR2Q8TDQ0 301 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 L3HYPDHQ96EM0 354 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 MS4A8Q9BY19 250 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 IL20Q9NYY1 176 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 GLS2Q9UI32 602 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 ALG5Q9Y673 324 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 DLC1Q96QB1 1528 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 PIK3C2GO75747 1445 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 IGSF9BQ9UPX0 1349 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 TMEM114B3SHH9 223 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 RPP14O95059 124 aaKnown RBP3.02□□□□□ -1.93
VPS13A-212ENST00000493341 ELK4P28324 431 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 SLC6A1P30531 599 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 AGTR1P30556 359 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 IDH2P48735 452 aaKnown RBP3.02□□□□□ -1.93
VPS13A-212ENST00000493341 NUDT2P50583 147 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 ELF3P78545 371 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-212ENST00000493341 SKP2Q13309 424 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 LINC00303Q3SY05 128 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 FAM222AQ5U5X8 452 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 C8orf74Q6P047 294 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 ZFP2Q6ZN57 461 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 OR5D18Q8NGL1 313 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 CLDN23Q96B33 292 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 THTPAQ9BU02 230 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 SMAD5-AS1Q9Y6J3 95 aa3.02□□□□□ -1.93
VPS13A-212ENST00000493341 CCDC144AA2RUR9 1427 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 CROCCQ5TZA2 2017 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 ARHGEF28Q8N1W1 1705 aaKnown RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 CENPVL3A0A0U1RRI6 287 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 OR6C70A6NIJ9 312 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 TCF21O43680 179 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 CCNE2O96020 404 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 NELFEP18615 380 aaKnown RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 MDKP21741 143 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 RPL12P30050 165 aaKnown RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 SPATA31B1PQ5VZV4 182 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 RASSF6Q6ZTQ3 369 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 MARCH3Q86UD3 253 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 COMMD7Q86VX2 200 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 ZNRF2Q8NHG8 242 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 TAMM41Q96BW9 452 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 PPP1R36Q96LQ0 422 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 PACRGQ96M98 296 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 TRIM45Q9H8W5 580 aaPredicted RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 RWDD2AQ9UIY3 292 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 ADGRB1O14514 1584 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 ITSN1Q15811 1721 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.01□□□□□ -1.93
VPS13A-212ENST00000493341 CLUHO75153 1309 aa3.01□□□□□ -1.93
VPS13A-212ENST00000493341 ZNF646O15015 1829 aaPredicted RBP3□□□□□ -1.93
VPS13A-212ENST00000493341 M0QYV0 167 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 LINC00614P0C842 121 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 GADD45AP24522 165 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 PSMA1P25786 263 aaKnown RBP3□□□□□ -1.93
VPS13A-212ENST00000493341 CD79BP40259 229 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 ZNF83P51522 516 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 MP68P56378 58 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 AP3S2P59780 193 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 CDC20Q12834 499 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 BTN1A1Q13410 526 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 ZFP82Q8N141 532 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 OR2M3Q8NG83 312 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 STACQ99469 402 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 ZNF430Q9H8G1 570 aaPredicted RBP3□□□□□ -1.93
VPS13A-212ENST00000493341 RGPD8O14715 1765 aaPredicted RBP3□□□□□ -1.93
VPS13A-212ENST00000493341 ABCA3Q99758 1704 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 EVC2Q86UK5 1308 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 USP32Q8NFA0 1604 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 IGHV1-3A0A0C4DH29 117 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 RBBP9O75884 186 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 CCNKO75909 580 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 GABRA1P14867 456 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 RAP1GDS1P52306 607 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 TCL1AP56279 114 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 DOLPP1Q86YN1 238 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 ZNF101Q8IZC7 436 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 VSIRQ9H7M9 311 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 TRPM3Q9HCF6 1732 aaPredicted RBP3□□□□□ -1.93
VPS13A-212ENST00000493341 TMEM38BQ9NVV0 291 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 CRYBG1Q9Y4K1 1723 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 TOPAZ1Q8N9V7 1692 aa3□□□□□ -1.93
VPS13A-212ENST00000493341 C1orf167Q5SNV9 1468 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 ACOX3O15254 700 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 MED6O75586 246 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 CTXN2P0C2S0 81 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 LINC00869P0C866 280 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 GTF2F2P13984 249 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 CXCL3P19876 107 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 ZNF678Q5SXM1 525 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 HENMT1Q5T8I9 393 aaKnown RBP2.99□□□□□ -1.93
VPS13A-212ENST00000493341 STK40Q8N2I9 435 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 OR10D3Q8NH80 312 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 C2orf15Q8WU43 125 aaKnown RBP2.99□□□□□ -1.93
VPS13A-212ENST00000493341 OR51B6Q9H340 312 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 PARVAQ9NVD7 372 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 CELA1Q9UNI1 258 aa2.99□□□□□ -1.93
VPS13A-212ENST00000493341 YTHDF2Q9Y5A9 579 aaKnown RBP2.99□□□□□ -1.93
VPS13A-212ENST00000493341 CDK12Q9NYV4 1490 aaPredicted RBP2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms