RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PVALBP20472 110 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 PXDC1Q5TGL8 231 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 COQ3Q9NZJ6 369 aa17.71■□□□□ 0.43
CCDC88B-208ENST00000492980 BORCS7-ASMTA0A0B4J1R7 106 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 PIGBOS1A0A0B4J2F0 54 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 FAM24AA6NFZ4 105 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 MED6O75586 246 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 EGR1P18146 543 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 LPAR6P43657 344 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 FAM27E3Q08E93 113 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 GALMQ96C23 342 aa17.71■□□□□ 0.42
CCDC88B-208ENST00000492980 KIAA2026Q5HYC2 2103 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 IGSF23A1L1A6 192 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 B8ZZF3 427 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 IGKV1-39P01597 117 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 IGKV1D-39P04432 117 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 BMP5P22003 454 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 GABRA2P47869 451 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 KLF3P57682 345 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 DRAM1Q8N682 238 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 CD177Q8N6Q3 437 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 Q8NA96 180 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 GPR146Q96CH1 333 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 GINS3Q9BRX5 216 aa17.7■□□□□ 0.42
CCDC88B-208ENST00000492980 SIGLEC5O15389 551 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 HBZP02008 142 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 IL34Q6ZMJ4 242 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 DOLPP1Q86YN1 238 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 OR10Z1Q8NGY1 313 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 TMEM171Q8WVE6 324 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 SCNM1Q9BWG6 230 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 LYRM2Q9NU23 88 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 ANKRD11Q6UB99 2663 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 SRRM5B3KS81 715 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 ATP6V1G2-DDX39BF2Z307 99 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 PITX3O75364 302 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 APOC3P02656 99 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 SLC25A6P12236 298 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 IL2RGP31785 369 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 CAV2P51636 162 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 KRBOX4Q5JUW0 171 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 VHLLQ6RSH7 139 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 C22orf34Q6ZV56 151 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 CISD2Q8N5K1 135 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 MRGPRDQ8TDS7 321 aa17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 NARS2Q96I59 477 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 LIN7CQ9NUP9 197 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-208ENST00000492980 A0A1B0GU03 582 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 NXPH3O95157 252 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 MMP9P14780 707 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 GLIPR1P48060 266 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 VAMP2P63027 116 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 PJVKQ0ZLH3 352 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 SPRNQ5BIV9 151 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 OR52L2PQ8NGH6 319 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 TOLLIPQ9H0E2 274 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 HRH4Q9H3N8 390 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 PLEKHF2Q9H8W4 249 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 IGLV3-9A0A075B6K5 115 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 PRRG2O14669 202 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 TMEM50AO95807 157 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 SEC11BP0C7V7 166 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 EPHA1P21709 976 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 PRDX2P32119 198 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 TBR1Q16650 682 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 ZNF585BQ52M93 769 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 FAM53AQ6NSI3 398 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 TPRX1Q8N7U7 411 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 MEGF10Q96KG7 1140 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 OR2V2Q96R30 315 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 RNF115Q9Y4L5 304 aa17.68■□□□□ 0.42
CCDC88B-208ENST00000492980 A0A0G2JNJ9 132 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 SPP1P10451 314 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 CCKARP32238 428 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 CFHR2P36980 270 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 ASCL1P50553 236 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 AKR1C2P52895 323 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 BLOC1S1P78537 153 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 SRSF3P84103 164 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 PAX5Q02548 391 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 AKR1C1Q04828 323 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 TMEM252Q8N6L7 170 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 ZNF645Q8N7E2 425 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 OR13A1Q8NGR1 328 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 LSM10Q969L4 123 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 PARP11Q9NR21 331 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 Q9UFV3 132 aa17.67■□□□□ 0.42
CCDC88B-208ENST00000492980 TMEM218A2RU14 115 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 ABCD4O14678 606 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 ZNF737O75373 536 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 ZNF16P17020 682 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 C1QTNF12Q5T7M4 302 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 BTNL8Q6UX41 500 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 FAM90A1Q86YD7 464 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 ODF3L1Q8IXM7 274 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 GCSAMQ8N6F7 178 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 SLC25A31Q9H0C2 315 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 IGKV1D-17A0A075B6S4 117 aa17.66■□□□□ 0.42
CCDC88B-208ENST00000492980 KIAA1324LA8MWY0 1029 aaPredicted RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms