RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 CSF1P09603 554 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 CT45A1Q5HYN5 189 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 SLC25A48Q6ZT89 311 aaKnown RBP16.85■□□□□ 0.29
LIME1-207ENST00000489212 LYG1Q8N1E2 194 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 CT45A3Q8NHU0 189 aa16.85■□□□□ 0.29
LIME1-207ENST00000489212 SOCS1O15524 211 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 MRPS14O60783 128 aaKnown RBP16.84■□□□□ 0.29
LIME1-207ENST00000489212 FBXO24O75426 580 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 IGKV1D-33P01593 117 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 IGKV1-33P01594 117 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 GAPDHP04406 335 aaKnown RBP16.84■□□□□ 0.29
LIME1-207ENST00000489212 LPLP06858 475 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 BLVRBP30043 206 aaPredicted RBP16.84■□□□□ 0.29
LIME1-207ENST00000489212 HNF4GQ14541 408 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 GNMTQ14749 295 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 TMEM30BQ3MIR4 351 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 CD200R1LQ6Q8B3 271 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 OR2W3Q7Z3T1 314 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 MOB3BQ86TA1 216 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 SPARTQ8N0X7 666 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 FAM89BQ8N5H3 189 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 OR51D1Q8NGF3 324 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 OR52L2PQ8NGH6 319 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 Q9H521 79 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 RAB9BQ9NP90 201 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 OR2S2Q9NQN1 319 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 KCNIP1Q9NZI2 227 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 MOB4Q9Y3A3 225 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 V9GY05 133 aa16.84■□□□□ 0.29
LIME1-207ENST00000489212 IGHV3-72A0A0B4J1Y9 119 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 FOXI3A8MTJ6 420 aaPredicted RBP16.83■□□□□ 0.28
LIME1-207ENST00000489212 PEX14O75381 377 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 TMEM11P17152 192 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 PLA2G7Q13093 441 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 HES1Q14469 280 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 UBE2UQ5VVX9 321 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 ZNF554Q86TJ5 538 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 SVOPQ8N4V2 548 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 RTN4IP1Q8WWV3 396 aaPredicted RBP16.83■□□□□ 0.28
LIME1-207ENST00000489212 FAM3DQ96BQ1 224 aa16.83■□□□□ 0.28
LIME1-207ENST00000489212 TRDV1A0A1B0GX56 115 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 LDLRAD4O15165 306 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 NAPSAO96009 420 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 ZNF137PP52743 207 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 OR10A3P58181 314 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 EBI3Q14213 229 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 HMGN3Q15651 99 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 C2orf76Q3KRA6 126 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 MORN2Q502X0 79 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 HES5Q5TA89 166 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 ZNF880Q6PDB4 577 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 RBMXL1Q96E39 390 aaKnown RBP16.82■□□□□ 0.28
LIME1-207ENST00000489212 CITED2Q99967 270 aaPredicted RBP16.82■□□□□ 0.28
LIME1-207ENST00000489212 URM1Q9BTM9 101 aaKnown RBP16.82■□□□□ 0.28
LIME1-207ENST00000489212 PLEKHJ1Q9NW61 149 aa16.82■□□□□ 0.28
LIME1-207ENST00000489212 TRAV1-2A0A0B4J238 106 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 ADARB2-AS1A8MUL3 147 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 M0QZK8 103 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 IL3RAP26951 378 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 PPP1CCP36873 323 aaKnown RBP16.81■□□□□ 0.28
LIME1-207ENST00000489212 TMEM50BP56557 158 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 NSUN5P1Q3KNT7 163 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 C9orf152Q5JTZ5 239 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 C5orf56Q8N8D9 126 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 HDHD3Q9BSH5 251 aaPredicted RBP16.81■□□□□ 0.28
LIME1-207ENST00000489212 YTHDF1Q9BYJ9 559 aaKnown RBP16.81■□□□□ 0.28
LIME1-207ENST00000489212 AK3Q9UIJ7 227 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 LRRC42Q9Y546 428 aa16.81■□□□□ 0.28
LIME1-207ENST00000489212 TMEM272A0A1B0GTI8 110 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 ZNF736B4DX44 427 aaPredicted RBP16.8■□□□□ 0.28
LIME1-207ENST00000489212 VEGFCP49767 419 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 PSMD7P51665 324 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 HTD2P86397 168 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 STEAP3Q658P3 488 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 IZUMO1Q8IYV9 350 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 Q8N6K4 173 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 OR5AU1Q8NGC0 362 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 EAF1Q96JC9 268 aaPredicted RBP16.8■□□□□ 0.28
LIME1-207ENST00000489212 STEAP1Q9UHE8 339 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 JPT1Q9UK76 154 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 RRP15Q9Y3B9 282 aaKnown RBP16.8■□□□□ 0.28
LIME1-207ENST00000489212 NOTCH3Q9UM47 2321 aa16.8■□□□□ 0.28
LIME1-207ENST00000489212 KCNAB3O43448 404 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 WIPF1O43516 503 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 PSMB9P28065 219 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 TCTEX1D4Q5JR98 221 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 C22orf42Q6IC83 251 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 C10orf99Q6UWK7 81 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 TGIF2LXQ8IUE1 241 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 ODF3L1Q8IXM7 274 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 GALMQ96C23 342 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 ARHGAP5-AS1Q96IT6 56 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 ABHD14AQ9BUJ0 271 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 CHMP1AQ9HD42 196 aaPredicted RBP16.79■□□□□ 0.28
LIME1-207ENST00000489212 HSF4Q9ULV5 492 aa16.79■□□□□ 0.28
LIME1-207ENST00000489212 TRBV6-6A0A0A6YYG2 114 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 PDCD5O14737 125 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 FGF16O43320 207 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 YPEL1O60688 119 aa16.78■□□□□ 0.28
LIME1-207ENST00000489212 GALP22466 123 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms