RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ATG5Q9H1Y0 275 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 RAB18Q9NP72 206 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 OR2S2Q9NQN1 319 aa11.88□□□□□ -0.51
USP4-212ENST00000486549 METTL21EPA6NDL7 271 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 A6NDX4 124 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 SLC31A2O15432 143 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 BRS3P32247 399 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 MNDAP41218 407 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 DYNLT3P51808 116 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 MRPS15P82914 257 aaKnown RBP11.87□□□□□ -0.51
USP4-212ENST00000486549 DIAPH2-AS1Q14236 149 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 GNMTQ14749 295 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 HMGN3Q15651 99 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 TMEM30BQ3MIR4 351 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 IDNKQ5T6J7 187 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 CCBE1Q6UXH8 406 aaPredicted RBP11.87□□□□□ -0.51
USP4-212ENST00000486549 LIAT1Q6ZQX7 453 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 MOB1BQ7L9L4 216 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 ZNF554Q86TJ5 538 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 OR10R2Q8NGX6 335 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 IL1F10Q8WWZ1 152 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 C12orf4Q9NQ89 552 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 ABRACLQ9P1F3 81 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 PITPNC1Q9UKF7 332 aa11.87□□□□□ -0.51
USP4-212ENST00000486549 CLPSL1A2RUU4 121 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 HSD17B6O14756 317 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 CD3GP09693 182 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 GNB3P16520 340 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 PPP1CCP36873 323 aaKnown RBP11.86□□□□□ -0.51
USP4-212ENST00000486549 REG1BP48304 166 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 CCDC144NLQ6NUI1 221 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 ZNF880Q6PDB4 577 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 OR4C13Q8NGP0 309 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 LINC01006Q8NI28 216 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 PTX4Q96A99 478 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 GALMQ96C23 342 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 FUNDC2Q9BWH2 189 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 RIMS4Q9H426 269 aaPredicted RBP11.86□□□□□ -0.51
USP4-212ENST00000486549 MMP24Q9Y5R2 645 aa11.86□□□□□ -0.51
USP4-212ENST00000486549 OOSP1A8MZH6 123 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 RAB27BO00194 218 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 TIMM23O14925 209 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 HIST1H1DP16402 221 aaKnown RBP11.85□□□□□ -0.51
USP4-212ENST00000486549 IL3RAP26951 378 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 HLA-DRB3P79483 266 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 Q3ZCU0 254 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 FBLN7Q53RD9 439 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 LINC00311Q8N616 119 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 ZNF439Q8NDP4 499 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 OR13F1Q8NGS4 319 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 OR56B4Q8NH76 319 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 CAPSLQ8WWF8 208 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 OCSTAMPQ9BR26 566 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 NPFFR1Q9GZQ6 430 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 JPT1Q9UK76 154 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 KCNK7Q9Y2U2 307 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 RNF114Q9Y508 228 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 NBEAL1Q6ZS30 2694 aa11.85□□□□□ -0.51
USP4-212ENST00000486549 TRBV6-6A0A0A6YYG2 114 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 A0A1W2PPI3 338 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 MFNGO00587 321 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 TSPAN9O75954 239 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 RAB7AP51149 207 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 ZNF134P52741 427 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 HTD2P86397 168 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 ARFRP1Q13795 201 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 MORN2Q502X0 79 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 CT45A1Q5HYN5 189 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 SLC25A48Q6ZT89 311 aaKnown RBP11.84□□□□□ -0.51
USP4-212ENST00000486549 MOB3BQ86TA1 216 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 DRAM1Q8N682 238 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 C8orf31Q8N9H6 132 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 OR5H6Q8NGV6 325 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 CT45A3Q8NHU0 189 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 ABHD14AQ9BUJ0 271 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 MRPS26Q9BYN8 205 aaKnown RBP11.84□□□□□ -0.51
USP4-212ENST00000486549 Q9N2K0 584 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 SIGLEC9Q9Y336 463 aa11.84□□□□□ -0.51
USP4-212ENST00000486549 RGS11O94810 467 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 GAPDHP04406 335 aaKnown RBP11.83□□□□□ -0.52
USP4-212ENST00000486549 SNRNP70P08621 437 aaKnown RBP11.83□□□□□ -0.52
USP4-212ENST00000486549 RPS19P39019 145 aaKnown RBP11.83□□□□□ -0.52
USP4-212ENST00000486549 SERPINB10P48595 397 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 VBP1P61758 197 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 NCS1P62166 190 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 HES1Q14469 280 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 PRR31Q5SQ13 230 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 LYG1Q8N1E2 194 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 WFDC12Q8WWY7 111 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 MAFIPQ8WZ33 124 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 SLC25A33Q9BSK2 321 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 C16orf95Q9H693 158 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 RHBDL2Q9NX52 303 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 MGAT4AQ9UM21 535 aa11.83□□□□□ -0.52
USP4-212ENST00000486549 IGHV3-72A0A0B4J1Y9 119 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 IGHV1-3A0A0C4DH29 117 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 HSPA12AO43301 675 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 YPEL1O60688 119 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 FCGR3AP08637 254 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 SCTP09683 121 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms