RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ZNF737O75373 536 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 SCTP09683 121 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 CD27P26842 260 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 ERVS71-1P61550 626 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 MEF2BQ02080 365 aaPredicted RBP11.38□□□□□ -0.59
USP40-214ENST00000483519 PRAMEF20Q5VT98 475 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 GON4LQ3T8J9 2241 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 RTTNQ86VV8 2226 aa11.38□□□□□ -0.59
USP40-214ENST00000483519 HRASP01112 189 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 F2RP25116 425 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 CLDN15P56746 228 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 SSX7Q7RTT5 188 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 MRPL41Q8IXM3 137 aaKnown RBP11.37□□□□□ -0.59
USP40-214ENST00000483519 DEFB119Q8N690 84 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 ZNF525Q8N782 197 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 RASL10BQ96S79 203 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 PLK3Q9H4B4 646 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 IGHV1OR15-9A0A0B4J2B8 117 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 OR6C6A6NF89 314 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 TNFSF12O43508 249 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 PGLYRP1O75594 196 aaPredicted RBP11.37□□□□□ -0.59
USP40-214ENST00000483519 NAPSAO96009 420 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 SERPINE2P07093 398 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 PAX5Q02548 391 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 FAM180AQ6UWF9 173 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 CENPVQ7Z7K6 275 aaPredicted RBP11.37□□□□□ -0.59
USP40-214ENST00000483519 ZNF295-AS1Q8N0V1 137 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 GPR146Q96CH1 333 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 ZNF837Q96EG3 531 aaPredicted RBP11.37□□□□□ -0.59
USP40-214ENST00000483519 HERPUD1Q15011 391 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 DAZAP2Q15038 168 aaPredicted RBP11.37□□□□□ -0.59
USP40-214ENST00000483519 LRRC75BQ2VPJ9 315 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 KRTCAP3Q53RY4 240 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 ACTL10Q5JWF8 245 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 CALHM1Q8IU99 346 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 LHX4Q969G2 390 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 ANAPC16Q96DE5 110 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 DEFB126Q9BYW3 111 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 OR51I2Q9H344 312 aa11.37□□□□□ -0.59
USP40-214ENST00000483519 A0A0G2JRQ6 117 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 TMEM250H0YL14 139 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 M0R143 59 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 SYNGR2O43760 224 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 CASP6P55212 293 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 RPL23P62829 140 aaKnown RBP11.36□□□□□ -0.59
USP40-214ENST00000483519 ZNF92Q03936 586 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 RAET1LQ5VY80 246 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 Q8NFD4 153 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 PARD6GQ9BYG4 376 aaPredicted RBP11.36□□□□□ -0.59
USP40-214ENST00000483519 SLC39A9Q9NUM3 307 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 PSENENQ9NZ42 101 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 CHCHD2Q9Y6H1 151 aaPredicted RBP11.36□□□□□ -0.59
USP40-214ENST00000483519 A0A1W2PPQ1 181 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 KIAA1324LA8MWY0 1029 aaPredicted RBP11.36□□□□□ -0.59
USP40-214ENST00000483519 ZNF32P17041 273 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 RAB4AP20338 218 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 GZMHP20718 246 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 KRTAP27-1Q3LI81 207 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 BATF2Q8N1L9 274 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 ZIC4Q8N9L1 334 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 RPUSD4Q96CM3 377 aaKnown RBP11.36□□□□□ -0.59
USP40-214ENST00000483519 PCGF1Q9BSM1 259 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 FUT9Q9Y231 359 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 ATP23Q9Y6H3 246 aa11.36□□□□□ -0.59
USP40-214ENST00000483519 B4E171 279 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 DKK1O94907 266 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 PSMB3P49720 205 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 ERVFC1-1P60608 527 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 CISD2Q8N5K1 135 aaKnown RBP11.35□□□□□ -0.59
USP40-214ENST00000483519 NEK7Q8TDX7 302 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 SNHG12Q9BXW3 62 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 WDR61Q9GZS3 305 aaKnown RBP11.35□□□□□ -0.59
USP40-214ENST00000483519 TMEM38BQ9NVV0 291 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 C19orf25Q9UFG5 118 aaPredicted RBP11.35□□□□□ -0.59
USP40-214ENST00000483519 ADAMTS20P59510 1910 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 LRRC3CA6NJW4 275 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 FGF5P12034 268 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 GLB1P16278 677 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 ELLP55199 621 aaPredicted RBP11.35□□□□□ -0.59
USP40-214ENST00000483519 TM4SF20Q53R12 229 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 WDR74Q6RFH5 385 aaPredicted RBP11.35□□□□□ -0.59
USP40-214ENST00000483519 OR2T10Q8NGZ9 312 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 TMEM37Q8WXS4 190 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 ATG101Q9BSB4 218 aa11.35□□□□□ -0.59
USP40-214ENST00000483519 TYMSP04818 313 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 OR4A8P0C604 315 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 IAPPP10997 89 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 SRP14P37108 136 aaKnown RBP11.34□□□□□ -0.59
USP40-214ENST00000483519 PRSS33Q8NF86 280 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 OR51H1Q8NH63 302 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 LSM10Q969L4 123 aaKnown RBP11.34□□□□□ -0.59
USP40-214ENST00000483519 CACNG5Q9UF02 275 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 MED12Q93074 2177 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 LRP5LA4QPB2 252 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 CD300LBA8K4G0 201 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 GGCTO75223 188 aaKnown RBP11.34□□□□□ -0.59
USP40-214ENST00000483519 BCL3P20749 454 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 FGF12P61328 243 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 ARL16Q0P5N6 197 aa11.34□□□□□ -0.59
USP40-214ENST00000483519 KCNIP4Q6PIL6 250 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms