RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 FUT3P21217 361 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 GPR12P47775 334 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 THBS3P49746 956 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 ZNF137PP52743 207 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 AQP4P55087 323 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 SLC35A2P78381 396 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 GPR50Q13585 617 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 MORN2Q502X0 79 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 C6orf141Q5SZD1 244 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 TGIF2LXQ8IUE1 241 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 NKAIN3Q8N8D7 197 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 OR2T10Q8NGZ9 312 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 CHPT1Q8WUD6 406 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 ABCG5Q9H222 651 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 ERGIC3Q9Y282 383 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 DNAH9Q9NYC9 4486 aa13.11□□□□□ -0.31
USP40-212ENST00000473191 A0A0A6YYD4 124 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 SPINT2O43291 252 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 PDCD6O75340 191 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 RPLP1P05386 114 aaKnown RBP13.1□□□□□ -0.31
USP40-212ENST00000473191 CNTFRP26992 372 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 HTR2CP28335 458 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 CD1BP29016 333 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 PPP1CCP36873 323 aaKnown RBP13.1□□□□□ -0.31
USP40-212ENST00000473191 UNC119Q13432 240 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 RBM48Q5RL73 367 aaKnown RBP13.1□□□□□ -0.31
USP40-212ENST00000473191 C6orf183Q5T699 404 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 C6orf201Q7Z4U5 140 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 KLHL30-AS1Q8NEE0 82 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 S1PR3Q99500 378 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 GFI1Q99684 422 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 UQCC2Q9BRT2 126 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 FAAP24Q9BTP7 215 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 OR2S2Q9NQN1 319 aa13.1□□□□□ -0.31
USP40-212ENST00000473191 FAM90A10PA6NDY2 464 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 FAM90A7PA6NKC0 464 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 FAM90A23PA8MXZ1 464 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 MOSP00540 346 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 IL3RAP26951 378 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 CHATP28329 748 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 IRF3Q14653 427 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 DEFB136Q30KP8 78 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 Q3ZCU0 254 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 FAM71E2Q8N5Q1 922 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 TMEM203Q969S6 136 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 RCC1LQ96I51 464 aaKnown RBP13.09□□□□□ -0.31
USP40-212ENST00000473191 MND1Q9BWT6 205 aa13.09□□□□□ -0.31
USP40-212ENST00000473191 LIN7CQ9NUP9 197 aaKnown RBP13.09□□□□□ -0.31
USP40-212ENST00000473191 H0YHG0 523 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 SLC2A2P11168 524 aaPredicted RBP13.08□□□□□ -0.32
USP40-212ENST00000473191 MAPK3P27361 379 aaPredicted RBP13.08□□□□□ -0.32
USP40-212ENST00000473191 OR3A3P47888 321 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 QRFPP83859 136 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 CFHR3Q02985 330 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 SPHARQ15513 63 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 MED22Q15528 200 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 C1orf100Q5SVJ3 147 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 LIPKQ5VXJ0 399 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 RNLSQ5VYX0 342 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 TMEM91Q6ZNR0 172 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 CEACAM19Q7Z692 300 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 FOXRED2Q8IWF2 684 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 P2RX4Q99571 388 aa13.08□□□□□ -0.32
USP40-212ENST00000473191 MRPL20Q9BYC9 149 aaKnown RBP13.08□□□□□ -0.32
USP40-212ENST00000473191 NUDT19A8MXV4 375 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 AP4M1O00189 453 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 SNRPBP14678 240 aaKnown RBP13.07□□□□□ -0.32
USP40-212ENST00000473191 SRMP19623 302 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 MYF6P23409 242 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 RPS25P62851 125 aaKnown RBP13.07□□□□□ -0.32
USP40-212ENST00000473191 RPS27AP62979 156 aaKnown RBP13.07□□□□□ -0.32
USP40-212ENST00000473191 LSAMPQ13449 338 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 RAX2Q96IS3 184 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 HDHD3Q9BSH5 251 aaPredicted RBP13.07□□□□□ -0.32
USP40-212ENST00000473191 ABHD14AQ9BUJ0 271 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 PARP12Q9H0J9 701 aaKnown RBP13.07□□□□□ -0.32
USP40-212ENST00000473191 DCLRE1BQ9H816 532 aa13.07□□□□□ -0.32
USP40-212ENST00000473191 TMEM14DPA8MWL7 114 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 LANCL1O43813 399 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 CA11O75493 328 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 GLAP06280 429 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 UCHL1P09936 223 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 CD37P11049 281 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 SLC35B1P78383 322 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 EGFEM1PQ0D2K5 195 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 HMGN3Q15651 99 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 HSD17B12Q53GQ0 312 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 ZNF695Q8IW36 515 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 MS4A15Q8N5U1 240 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 RASL11BQ9BPW5 248 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 NABP2Q9BQ15 211 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 TM2D1Q9BX74 207 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 CST11Q9H112 138 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 ZFP57Q9NU63 452 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 GHRLQ9UBU3 117 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 JPT1Q9UK76 154 aa13.06□□□□□ -0.32
USP40-212ENST00000473191 SAA2-SAA4A0A096LPE2 208 aa13.05□□□□□ -0.32
USP40-212ENST00000473191 SLC22A1O15245 554 aa13.05□□□□□ -0.32
USP40-212ENST00000473191 ST8SIA5O15466 376 aa13.05□□□□□ -0.32
USP40-212ENST00000473191 SOCS1O15524 211 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms