RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 LHFPL1Q86WI0 220 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 TGIF2LYQ8IUE0 185 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 RSG1Q9BU20 258 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 SPACA1Q9HBV2 294 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 EPG5Q9HCE0 2579 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 TSPAN9O75954 239 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 IFNA5P01569 189 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 CD8AP01732 235 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 TCF15Q12870 199 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 ACSF3Q4G176 576 aaPredicted RBP11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 SPRNQ5BIV9 151 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 FOXL2NBQ6ZUU3 175 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 STX12Q86Y82 276 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 RND1Q92730 232 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 MOB3AQ96BX8 217 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 MRPS24Q96EL2 167 aaKnown RBP11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 TLNRD1Q9H1K6 362 aa11.64□□□□□ -0.55
CCDC88A-211ENST00000471947 M0R1X1 148 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 FAHD2BQ6P2I3 314 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 FGFRL1Q8N441 504 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 SNRNP40Q96DI7 357 aaKnown RBP11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 FAHD2AQ96GK7 314 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 CCL13Q99616 98 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 LINC00470Q9BZP3 86 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 CLN8Q9UBY8 286 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 TACC2O95359 2948 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 PRR33A8MZF0 331 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 TMPRSS2O15393 492 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 PGLYRP1O75594 196 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 RXFP4Q8TDU9 374 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 SPIN2AQ99865 258 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 SPIN2BQ9BPZ2 258 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 OR2W1Q9Y3N9 320 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 ARHGAP32A7KAX9 2087 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 DLX1P56177 255 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 DUX4L9Q6RFH8 374 aaPredicted RBP11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 PRSS33Q8NF86 280 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 ZNRD1Q9P1U0 126 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 HIVEP3Q5T1R4 2406 aa11.63□□□□□ -0.55
CCDC88A-211ENST00000471947 MFSD2BA6NFX1 497 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 HBZP02008 142 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 MUC1P15941 1255 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 TUBG1P23258 451 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 HLA-DRB3P79483 266 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 MRPL30Q8TCC3 161 aaKnown RBP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 SHARPINQ9H0F6 387 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 A0A0G2JRQ6 117 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 UBE2L5PA0A1B0GUS4 154 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 H7C2Y5 167 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 MLNRO43193 412 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 IRF2P14316 349 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 EWSR1Q01844 656 aaKnown RBP eCLIP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 C17orf50Q8WW18 174 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 PLEKHF2Q9H8W4 249 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 FAM212BQ9NTI7 297 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 GNG13Q9P2W3 67 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 ZNF107Q9UII5 783 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 HSF4Q9ULV5 492 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 EXPH5Q8NEV8 1989 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 KRBOX1C9JBD0 128 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 TPPPO94811 219 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 IFNA10P01566 189 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 GYPAP02724 150 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM42Q69YG0 159 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 LRFN3Q9BTN0 628 aa11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 NKX6-2Q9C056 277 aaPredicted RBP11.62□□□□□ -0.55
CCDC88A-211ENST00000471947 RAMP3O60896 148 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 RPS2P15880 293 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 RPL23AP62750 156 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 KIAA0141Q14154 515 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 OR13A1Q8NGR1 328 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 OR51I2Q9H344 312 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 ZDHHC11Q9H8X9 412 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 PSENENQ9NZ42 101 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 LRP5LA4QPB2 252 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 LYNX1G3V0Z9 82 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 ATG12O94817 140 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 ARG1P05089 322 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 LYNX1P0DP58 116 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 SLC25A4P12235 298 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 FAM185AQ8N0U4 392 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 LYG1Q8N1E2 194 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 GPR146Q96CH1 333 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 STARD4Q96DR4 205 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 WFDC1Q9HC57 220 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 FBLN5Q9UBX5 448 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 DEDDO75618 318 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 IGLV3-1P01715 115 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 IGHV3-48P01763 117 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 SFTA3P0C7M3 94 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 F2RP25116 425 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 KLF3P57682 345 aaPredicted RBP11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 KCNJ16Q9NPI9 418 aa11.61□□□□□ -0.55
CCDC88A-211ENST00000471947 IGHV2OR16-5A0A0B4J2B6 119 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 A0A0U1RQK1 487 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 TMEM30CPA0ZSE6 113 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 C12orf77C9JDV5 145 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 JTBO76095 146 aa11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 PRB4P10163 310 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-211ENST00000471947 GPR12P47775 334 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms