RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR11H6Q8NGC7 330 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 OR10A7Q8NGE5 316 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 OR5H6Q8NGV6 325 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 NDNFQ8TB73 568 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 PHF21AQ96BD5 680 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 KCTD12Q96CX2 325 aaKnown RBP9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 SLC25A38Q96DW6 304 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 RAB3CQ96E17 227 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 KIRREL1Q96J84 757 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 BCL7BQ9BQE9 202 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 CLEC7AQ9BXN2 247 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 DCSTAMPQ9H295 470 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 RIMS4Q9H426 269 aaPredicted RBP9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 RHBDL2Q9NX52 303 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 IDI2-AS1Q9NZ38 188 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 AK3Q9UIJ7 227 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 VPREB3Q9UKI3 123 aa9.61□□□□□ -0.87
SQSTM1-206ENST00000466342 DYNC2H1Q8NCM8 4307 aaKnown RBP9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A087X0M5 115 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A1B0GX30 115 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 ODF3BA8MYP8 253 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 C12orf77C9JDV5 145 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 K7EIL1 84 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 MFNGO00587 321 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 ARG1P05089 322 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 HIST1H1DP16402 221 aaKnown RBP9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 RCC1P18754 421 aaPredicted RBP9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 RORCP51449 518 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 ARL6IP1Q15041 203 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 DEFB121Q5J5C9 76 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 FOXB2Q5VYV0 432 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 BAIAP2L2Q6UXY1 529 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 ARL11Q969Q4 196 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 MEGF9Q9H1U4 602 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 CHMP1AQ9HD42 196 aaPredicted RBP9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 RAB9BQ9NP90 201 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 C12orf4Q9NQ89 552 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 KCNK7Q9Y2U2 307 aa9.6□□□□□ -0.87
SQSTM1-206ENST00000466342 TRBV6-6A0A0A6YYG2 114 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 FAM172BPA6NC97 362 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 SERPINE3A8MV23 424 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 F2RL2O00254 374 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 SPINT2O43291 252 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 NOL3O60936 208 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 GNB3P16520 340 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 NFYBP25208 207 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 LGALS4P56470 323 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 DYNC1I2Q13409 638 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 HMGN3Q15651 99 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 AANATQ16613 207 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 LTC4SQ16873 150 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 TMEM30BQ3MIR4 351 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF880Q6PDB4 577 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 MOB1BQ7L9L4 216 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 ABHD12Q8N2K0 398 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 RFESDQ8TAC1 157 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 CMSS1Q9BQ75 279 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 OCSTAMPQ9BR26 566 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 HDHD3Q9BSH5 251 aaPredicted RBP9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 TAF9BQ9HBM6 251 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 ZNF286AQ9HBT8 521 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 KCNIP1Q9NZI2 227 aa9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 TBL2Q9Y4P3 447 aaKnown RBP9.59□□□□□ -0.87
SQSTM1-206ENST00000466342 A0A075B6Q4 140 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 A0A0A6YYH2 397 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 A6NJ64 397 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 SDCBPO00560 298 aaPredicted RBP9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 HBZP02008 142 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 CD3GP09693 182 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 MRPS15P82914 257 aaKnown RBP9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 SPCS2Q15005 226 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 UBE2NLQ5JXB2 153 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 DHRS7BQ6IAN0 325 aaPredicted RBP9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 PRR18Q8N4B5 295 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 OR52M1Q8NGK5 317 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 OR1L1Q8NH94 360 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 UBALD1Q8TB05 177 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 SETD6Q8TBK2 473 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF596Q8TC21 504 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 ACOT12Q8WYK0 555 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 AP3S1Q92572 193 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 ISOC1Q96CN7 298 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 AJUBAQ96IF1 538 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 SSX3Q99909 188 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 ABCG5Q9H222 651 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 MGAT4AQ9UM21 535 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 CEPT1Q9Y6K0 416 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 TENM2Q9NT68 2774 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 SACSQ9NZJ4 4579 aa9.58□□□□□ -0.88
SQSTM1-206ENST00000466342 H3BMQ9 156 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 C3orf84H3BNL1 204 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 TOR1AO14656 332 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 IGLV1-47P01700 117 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 GSTP1P09211 210 aaKnown RBP9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF182P17025 639 aaPredicted RBP9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 CD69Q07108 199 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 ARFRP1Q13795 201 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 HLA-DRB5Q30154 266 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF260Q3ZCT1 412 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 UTF1Q5T230 341 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms