RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 WNT9BO14905 357 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 PSPNO60542 156 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 CRYBA1P05813 215 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 FTH1P19P0C7X4 201 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 CEACAM6P40199 344 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 KIR2DL2P43627 348 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF146Q15072 292 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 INO80CQ6PI98 192 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 PIP4P1Q86T03 277 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 C9orf106Q8NAJ2 232 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 RNASE11Q8TAA1 199 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 RARRES2Q99969 163 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 C20orf24Q9BUV8 137 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 ESRP2Q9H6T0 727 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 OBP2BQ9NPH6 170 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 KCNS2Q9ULS6 477 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 PRELID3BQ9Y3B1 194 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 NBEAQ8NFP9 2946 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 A0A1B0GU03 582 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 COLCA2A8K830 154 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 MLNRO43193 412 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 WDR1O75083 606 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 TFF1P04155 84 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 MMP9P14780 707 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 FOXF2Q12947 444 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 GUSBP1Q15486 140 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF585BQ52M93 769 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 FAM53AQ6NSI3 398 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 MOB1BQ7L9L4 216 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 WDR31Q8NA23 367 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 CLCC1Q96S66 551 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 HEATR1Q9H583 2144 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 PARD6AQ9NPB6 346 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 ASCL3Q9NQ33 180 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 RPS10P5Q9NQ39 176 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 MBNL3Q9NUK0 354 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 ZMAT5Q9UDW3 170 aaKnown RBP7.55□□□□□ -1.2
SYNE1-217ENST00000466159 CACNG5Q9UF02 275 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 FZR1Q9UM11 496 aa7.55□□□□□ -1.2
SYNE1-217ENST00000466159 HAND1O96004 215 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 IGKV1-5P01602 117 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 SNRNP70P08621 437 aaKnown RBP7.54□□□□□ -1.2
SYNE1-217ENST00000466159 OR13C7P0DN81 318 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 CD82P27701 267 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 BAXQ07812 192 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 TMEM267Q0VDI3 215 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-217ENST00000466159 AWAT1Q58HT5 328 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 SPSB3Q6PJ21 355 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 C11orf53Q8IXP5 236 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 WIPI2Q9Y4P8 454 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 UMAD1C9J7I0 102 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 CNOT4O95628 575 aaKnown RBP7.54□□□□□ -1.2
SYNE1-217ENST00000466159 IGKV3-15P01624 115 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 DAOP14920 347 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 CBR1P16152 277 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 HMGN3Q15651 99 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 ZFP82Q8N141 532 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 DRAM1Q8N682 238 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 SMCO4Q9NRQ5 59 aa7.54□□□□□ -1.2
SYNE1-217ENST00000466159 USF3Q68DE3 2245 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 C7orf77A4D0Y5 90 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 M0R036 132 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 TXNL1O43396 289 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 IAPPP10997 89 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 SLC25A6P12236 298 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 HOXB1P14653 301 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-217ENST00000466159 FABP6P51161 128 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 OR8G5Q8NG78 346 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 OR1L1Q8NH94 360 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 C2CD4CQ8TF44 421 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 C14orf79Q96F83 325 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 ATP5SQ99766 215 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 PBDC1Q9BVG4 233 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 BCL2L14Q9BZR8 327 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 SLC35B3Q9H1N7 401 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 UFSP2Q9NUQ7 469 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 RNF150Q9ULK6 438 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 ZNF98A6NK75 572 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 A6NLC8 198 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 TMEM210A6NLX4 147 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 AQP7O14520 342 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 WNT2P09544 360 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 COX5AP20674 150 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 HOXC12P31275 282 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 OR3A1P47881 315 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 RAB13P51153 203 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 RPL23AP62750 156 aaKnown RBP7.53□□□□□ -1.2
SYNE1-217ENST00000466159 AESQ08117 197 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 AVPI1Q5T686 147 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 PRAMEF6Q5VXH4 476 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 IGFL2Q6UWQ7 119 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 Q6ZR03 302 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 STX12Q86Y82 276 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 LFNGQ8NES3 379 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 CD300LFQ8TDQ1 290 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 LSM10Q969L4 123 aaKnown RBP7.53□□□□□ -1.2
SYNE1-217ENST00000466159 ISOC2Q96AB3 205 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 GNPNAT1Q96EK6 184 aaPredicted RBP7.53□□□□□ -1.2
SYNE1-217ENST00000466159 RAB40CQ96S21 281 aa7.53□□□□□ -1.2
SYNE1-217ENST00000466159 HES4Q9HCC6 221 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms