RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 IGHV3-43A0A0B4J1X8 118 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 IGKV1-6A0A0C4DH72 117 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 RNASEK-C17orf49H0YIS7 233 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 BET1O15155 118 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 HSPA12AO43301 675 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 IGHV3-43DP0DP04 118 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 HOXB4P17483 251 aaPredicted RBP12.89□□□□□ -0.35
USP40-206ENST00000443711 ZBTB25P24278 435 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 OR3A3P47888 321 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 DLX1P56177 255 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 TAS2R46P59540 309 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 KLRD1Q13241 179 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 GPR157Q5UAW9 335 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 LYSMD2Q8IV50 215 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 ABHD12Q8N2K0 398 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 PNKDQ8N490 385 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 OR10J5Q8NHC4 309 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 NANPQ8TBE9 248 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 SNAPC3Q92966 411 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 CLEC7AQ9BXN2 247 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 GSX1Q9H4S2 264 aaPredicted RBP12.89□□□□□ -0.35
USP40-206ENST00000443711 TAS2R8Q9NYW2 309 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 SLC23A1Q9UHI7 598 aa12.89□□□□□ -0.35
USP40-206ENST00000443711 RBMX2Q9Y388 322 aaKnown RBP12.89□□□□□ -0.35
USP40-206ENST00000443711 TRBV6-7A0A0A0MS04 114 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 IGHV2-26A0A0B4J1V2 119 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 CENPVL3A0A0U1RRI6 287 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 TOR1AO14656 332 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 YPEL1O60688 119 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 CSF1P09603 554 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 HNF1AP20823 631 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 COX7A1P24310 79 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 HLA-DMAP28067 261 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 PPP1CCP36873 323 aaKnown RBP12.88□□□□□ -0.35
USP40-206ENST00000443711 CEACAM6P40199 344 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 UBE2E1P51965 193 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 PRRX1P54821 245 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 PRB3Q04118 309 aaPredicted RBP12.88□□□□□ -0.35
USP40-206ENST00000443711 ZNF846Q147U1 533 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 HERPUD1Q15011 391 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 CDK10Q15131 360 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 Q3ZCU0 254 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 MORN2Q502X0 79 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 LY6G6FQ5SQ64 297 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 FAM120AOSQ5T036 256 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 HCP5Q6MZN7 132 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 TMEM229BQ8NBD8 167 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 OR11H6Q8NGC7 330 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 OR10V1Q8NGI7 309 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 OR5H2Q8NGV7 314 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 OR9G1Q8NH87 305 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 YPEL2Q96QA6 119 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 GINS4Q9BRT9 223 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 WDR12Q9GZL7 423 aaKnown RBP12.88□□□□□ -0.35
USP40-206ENST00000443711 NECAP2Q9NVZ3 263 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 ZNF107Q9UII5 783 aaPredicted RBP12.88□□□□□ -0.35
USP40-206ENST00000443711 PSG11Q9UQ72 335 aa12.88□□□□□ -0.35
USP40-206ENST00000443711 HIVEP2P31629 2446 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 ZNF469Q96JG9 3925 aaPredicted RBP12.87□□□□□ -0.35
USP40-206ENST00000443711 TRAV40A0A0B4J280 105 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 IGHV1-69DA0A0B4J2H0 117 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 FAM172BPA6NC97 362 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 ZNF736B4DX44 427 aaPredicted RBP12.87□□□□□ -0.35
USP40-206ENST00000443711 IGHV1-69P01742 117 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 TAS2R19P59542 299 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 LSAMPQ13449 338 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 GNMTQ14749 295 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 ACTBL2Q562R1 376 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 KLF17Q5JT82 389 aaPredicted RBP12.87□□□□□ -0.35
USP40-206ENST00000443711 FAM53AQ6NSI3 398 aaPredicted RBP12.87□□□□□ -0.35
USP40-206ENST00000443711 PDZD9Q8IXQ8 264 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 C8orf31Q8N9H6 132 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 LEAP2Q969E1 77 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 OR1A1Q9P1Q5 309 aa12.87□□□□□ -0.35
USP40-206ENST00000443711 J3QR06 171 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 LANCL1O43813 399 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 FSHBP01225 129 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 IGHV3-7P01780 117 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 PMP2P02689 132 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 OR5H8P0DN80 308 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 IGHV4-38-2P0DP08 117 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 TBPP20226 339 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 CD40LGP29965 261 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 HRH1P35367 487 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 PPP5CP53041 499 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 BPIFB3P59826 476 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 UTF1Q5T230 341 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 ZNF596Q8TC21 504 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 EDARADDQ8WWZ3 215 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 SDHCQ99643 169 aaPredicted RBP12.86□□□□□ -0.35
USP40-206ENST00000443711 TOLLIPQ9H0E2 274 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 RDH8Q9NYR8 311 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 EHFQ9NZC4 300 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 ZNF69Q9UC07 566 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 NUP50Q9UKX7 468 aa12.86□□□□□ -0.35
USP40-206ENST00000443711 SONP18583 2426 aaKnown RBP12.86□□□□□ -0.35
USP40-206ENST00000443711 IGHV3OR16-10A0A075B7F0 116 aa12.85□□□□□ -0.35
USP40-206ENST00000443711 A0A1W2PRD5 423 aa12.85□□□□□ -0.35
USP40-206ENST00000443711 A0A1W2PRF3 423 aa12.85□□□□□ -0.35
USP40-206ENST00000443711 A0A1W2PRM7 423 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms