RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TSACCQ96A04 125 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 C2orf88Q9BSF0 95 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 CBLN4Q9NTU7 201 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 TMEM140Q9NV12 185 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 NRXN3Q9Y4C0 1643 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ZNF816Q0VGE8 651 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 ACSF3Q4G176 576 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 IBA57Q5T440 356 aaKnown RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 RASL11BQ9BPW5 248 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 CXCL16Q9H2A7 254 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 PROCRQ9UNN8 238 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 PHF3Q92576 2039 aaKnown RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 NDUFB3O43676 98 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 FGF5P12034 268 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 OR4C12Q96R67 309 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 KIR2DL4Q99706 377 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 WDR13Q9H1Z4 485 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 RPS4XP62701 263 aaKnown RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 POU2AF1Q16633 256 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ZNF506Q5JVG8 444 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 DEFB119Q8N690 84 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 CYB561D1Q8N8Q1 229 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 LPAR5Q9H1C0 372 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 FAM90A9PA6NNJ1 464 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 IL2RAP01589 272 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 SPNP16150 400 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 WDR38Q5JTN6 314 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 SPEM1Q8N4L4 309 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ZNF740Q8NDX6 193 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ALKBH7Q9BT30 221 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 IDSB3KWA1 339 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 HS3ST1O14792 307 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 TMPRSS11DO60235 418 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 SMAD2Q15796 467 aaKnown RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 TMEM179BQ7Z7N9 219 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 C16orf52Q8NHV5 167 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 PRSS21Q9Y6M0 314 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 TRAV39A0A0B4J263 110 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 HBBP68871 147 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 TMEM249Q2WGJ8 235 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 RGPD3A6NKT7 1758 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 RGPD4Q7Z3J3 1758 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 MAS1LP35410 378 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 C16orf82Q7Z2V1 217 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 GTF3AQ92664 365 aaKnown RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 YAE1D1Q9NRH1 226 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 CYSLTR1Q9Y271 337 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 DOCK4Q8N1I0 1966 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 CDC14CA4D256 554 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ZNF785A8K8V0 405 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 TIAL1Q01085 375 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS53-204ENST00000437048 LRRTM3Q86VH5 581 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ZNF236Q9UL36 1845 aa6.33□□□□□ -1.4
VPS53-204ENST00000437048 ASTLQ6HA08 431 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 METTL27Q8N6F8 245 aaPredicted RBP6.33□□□□□ -1.4
VPS53-204ENST00000437048 C5orf49A4QMS7 147 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 EIF3GO75821 320 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS53-204ENST00000437048 MUC1P15941 1255 aaPredicted RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 TSPOP30536 169 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 LGALS7P47929 136 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 MOGAT3Q86VF5 341 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 RBM45Q8IUH3 476 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 MS4A3Q96HJ5 214 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 ISG20L2Q9H9L3 353 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 WNT3P56703 355 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 ZNF519Q8TB69 540 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 OR51B2Q9Y5P1 312 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 GAB4Q2WGN9 574 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CITED1Q99966 193 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 PRRG2O14669 202 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CXCL3P19876 107 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 HOXA5P20719 270 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 GSN-AS1Q9NRJ2 163 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 EML2O95834 649 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 LPAR6P43657 344 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 RPL11P62913 178 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 SLC25A22Q9H936 323 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 TRAV1-1A0A0B4J248 108 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 ZNF735P0CB33 412 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 PMP22Q01453 160 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CIARTQ8N365 385 aaPredicted RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 TRAV38-1A0A0B4J264 116 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 SYNGR1O43759 233 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 IAPPP10997 89 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 ATP6V0CP27449 155 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 FNDC7Q5VTL7 733 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 MRGPREQ86SM8 312 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CHCHD1Q96BP2 118 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 RNF167Q9H6Y7 350 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 SP9P0CG40 484 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CAMPP49913 170 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 NRN1LQ496H8 165 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 RBPMS2Q6ZRY4 209 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 GPR82Q96P67 336 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 DNAJB12Q9NXW2 375 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 STRCQ7RTU9 1775 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 H3BRM9 83 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 OTPQ5XKR4 325 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 RTN4RL1Q86UN2 441 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms