RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 CCL24O00175 119 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 RRP9O43818 475 aaKnown RBP13.41□□□□□ -0.26
TRIM39-209ENST00000428728 SLC2A2P11168 524 aaPredicted RBP13.41□□□□□ -0.26
TRIM39-209ENST00000428728 MYF6P23409 242 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 F2RL1P55085 397 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 WNT4P56705 351 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 PNLIPRP3Q17RR3 467 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 VAX1Q5SQQ9 334 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 SIGIRRQ6IA17 410 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 GAPTQ8N292 157 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 NKAIN3Q8N8D7 197 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 GON7Q9BXV9 100 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 TAF9BQ9HBM6 251 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 C8orf4Q9NR00 106 aa13.41□□□□□ -0.26
TRIM39-209ENST00000428728 CNOT2Q9NZN8 540 aaKnown RBP13.41□□□□□ -0.26
TRIM39-209ENST00000428728 FAM90A10PA6NDY2 464 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 FAM90A7PA6NKC0 464 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 FAM90A23PA8MXZ1 464 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 SC5DO75845 299 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 FUT3P21217 361 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 VDAC1P21796 283 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 SOX6P35712 828 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 CD69Q07108 199 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 LSAMPQ13449 338 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 FOXE3Q13461 319 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 NKAPLQ5M9Q1 402 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 LAIR2Q6ISS4 152 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 C5orf24Q7Z6I8 188 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 CDH26Q8IXH8 852 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 FAM71E2Q8N5Q1 922 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 BPIFB6Q8NFQ5 453 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 OR8H1Q8NGG4 311 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 DCLRE1BQ9H816 532 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 OR2S2Q9NQN1 319 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 PSORS1C1Q9UIG5 152 aa13.4□□□□□ -0.26
TRIM39-209ENST00000428728 H0YHG0 523 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 PDCD6O75340 191 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 CA11O75493 328 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 MAPK3P27361 379 aaPredicted RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 PPP1CCP36873 323 aaKnown RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 LUMP51884 338 aaPredicted RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 INSL4Q14641 139 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 MMDQ15546 238 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 UNQ9370/PRO34162Q6UXP9 181 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 LYPD6Q86Y78 171 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 OR52L2PQ8NGH6 319 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 MRPL30Q8TCC3 161 aaKnown RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 ABHD14AQ9BUJ0 271 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 MRPL20Q9BYC9 149 aaKnown RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 MBNL3Q9NUK0 354 aaKnown RBP13.39□□□□□ -0.27
TRIM39-209ENST00000428728 KCNIP1Q9NZI2 227 aa13.39□□□□□ -0.27
TRIM39-209ENST00000428728 LANCL1O43813 399 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 ELANEP08246 267 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 MORN2Q502X0 79 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 FAM27D1Q5T7N8 215 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 OR8U1Q8NH10 309 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 THRSPQ92748 146 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 UQCC2Q9BRT2 126 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 CST11Q9H112 138 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 KCNK15Q9H427 330 aa13.38□□□□□ -0.27
TRIM39-209ENST00000428728 ZNF107Q9UII5 783 aaPredicted RBP13.38□□□□□ -0.27
TRIM39-209ENST00000428728 IGHG4P01861 327 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 CD1AP06126 327 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 GLAP06280 429 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 DGCR2P98153 550 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 CFHR3Q02985 330 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 GABPB1Q06547 395 aaPredicted RBP13.37□□□□□ -0.27
TRIM39-209ENST00000428728 RBM48Q5RL73 367 aaKnown RBP13.37□□□□□ -0.27
TRIM39-209ENST00000428728 OR10K2Q6IF99 312 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 NANOGP1Q8N7R0 232 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 RNF152Q8N8N0 203 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 OR5M8Q8NGP6 311 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 KCTD7Q96MP8 289 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 B9D2Q9BPU9 175 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 JPT1Q9UK76 154 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 ERGIC3Q9Y282 383 aa13.37□□□□□ -0.27
TRIM39-209ENST00000428728 COL7A1Q02388 2944 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 CNTFRP26992 372 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 CDX1P47902 265 aaPredicted RBP13.36□□□□□ -0.27
TRIM39-209ENST00000428728 STEAP3Q658P3 488 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 ODF3L1Q8IXM7 274 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 FBLIM1Q8WUP2 373 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 C4orf3Q8WVX3 66 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 NEDD4LQ96PU5 975 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 SULT4A1Q9BR01 284 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 TMED9Q9BVK6 235 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 PLCXD1Q9NUJ7 323 aa13.36□□□□□ -0.27
TRIM39-209ENST00000428728 OR5H8P0DN80 308 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 PSMB8P28062 276 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 CHATP28329 748 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 OR3A3P47888 321 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 GP2P55259 537 aaKnown RBP13.35□□□□□ -0.27
TRIM39-209ENST00000428728 ACTBP60709 375 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 DCTN2Q13561 401 aaKnown RBP13.35□□□□□ -0.27
TRIM39-209ENST00000428728 KIR2DS1Q14954 304 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 ACSM3Q53FZ2 586 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 C6orf141Q5SZD1 244 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 OGFRL1Q5TC84 451 aaPredicted RBP13.35□□□□□ -0.27
TRIM39-209ENST00000428728 C6orf201Q7Z4U5 140 aa13.35□□□□□ -0.27
TRIM39-209ENST00000428728 ZNF554Q86TJ5 538 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms