RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 F2RL2O00254 374 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 UPK1BO75841 260 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 SLC22A5O76082 557 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 AMY2AP04746 511 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 IGHV4-31P0DP07 118 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 PRTN3P24158 256 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 ARHGDIBP52566 201 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 Q3ZCU0 254 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 SCGB2B2Q4G0G5 96 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 PRAMEF5Q5TYX0 476 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 GPR157Q5UAW9 335 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 C11orf88Q6PI97 169 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 KRTAP1-3Q8IUG1 177 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 OR1L1Q8NH94 360 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 TNFRSF14Q92956 283 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 MSI2Q96DH6 328 aaKnown RBP8.31□□□□□ -1.08
CD44-207ENST00000425428 TMEM133Q9H2Q1 129 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 PALMDQ9NP74 551 aa8.31□□□□□ -1.08
CD44-207ENST00000425428 ASH1LQ9NR48 2969 aaKnown RBP8.31□□□□□ -1.08
CD44-207ENST00000425428 LINC00854A0A1B0GVQ3 168 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 C15orf65H3BRN8 121 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 J3QRK9 145 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 YPEL1O60688 119 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 CD3DP04234 171 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 INHBBP09529 407 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 CD99P14209 185 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 FOSL1P15407 271 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 OMGP23515 440 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 CEACAM3P40198 252 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 LUMP51884 338 aaPredicted RBP8.3□□□□□ -1.08
CD44-207ENST00000425428 DCTN2Q13561 401 aaKnown RBP8.3□□□□□ -1.08
CD44-207ENST00000425428 VAX1Q5SQQ9 334 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 SPNS3Q6ZMD2 512 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 VMO1Q7Z5L0 202 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 OR10X1Q8NGY0 326 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 OR9G1Q8NH87 305 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 YPEL2Q96QA6 119 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 CABLES2Q9BTV7 478 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 SUCNR1Q9BXA5 334 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 CLEC7AQ9BXN2 247 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 LINC00574Q9H8X3 128 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 MMP26Q9NRE1 261 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 GFOD1Q9NXC2 390 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 ZNF221Q9UK13 617 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 ANAPC10Q9UM13 185 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 A0A096LNT2 108 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 TRBV6-7A0A0A0MS04 114 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 ZNF16P17020 682 aaPredicted RBP8.3□□□□□ -1.08
CD44-207ENST00000425428 FCGR2CP31995 323 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 PAX8Q06710 450 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 BAK1Q16611 211 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 C17orf58Q2M2W7 97 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 PLA1AQ53H76 456 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 IGSF11Q5DX21 431 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 OVCH2Q7RTZ1 564 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 ABHD12Q8N2K0 398 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 OR10V1Q8NGI7 309 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 UBALD1Q8TB05 177 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 SNAPC3Q92966 411 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 ZNF2Q9BSG1 426 aaPredicted RBP8.3□□□□□ -1.08
CD44-207ENST00000425428 SIRT7Q9NRC8 400 aa8.3□□□□□ -1.08
CD44-207ENST00000425428 MYO9AB2RTY4 2548 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 IGHV3-43A0A0B4J1X8 118 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 M0QYG6 137 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 CD74P04233 296 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 CGB3P0DN86 165 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 CGB7P0DN87 165 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 IGHV3-43DP0DP04 118 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 EPHA1P21709 976 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 COX7A1P24310 79 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 RFX2P48378 723 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 GNG10P50151 68 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 BPIFB3P59826 476 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 MORN2Q502X0 79 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 LY6G6FQ5SQ64 297 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 LYSMD2Q8IV50 215 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 CMTM1Q8IZ96 169 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 OR52L2PQ8NGH6 319 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 NANPQ8TBE9 248 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 ENKURQ8TC29 256 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 ZFAND1Q8TCF1 268 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 GIMAP1Q8WWP7 306 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 S1PR3Q99500 378 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 ABHD14AQ9BUJ0 271 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 YAE1D1Q9NRH1 226 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 RDH8Q9NYR8 311 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 PIPOXQ9P0Z9 390 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 COPZ2Q9P299 210 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 OR2W1Q9Y3N9 320 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 ABCA1O95477 2261 aa8.29□□□□□ -1.08
CD44-207ENST00000425428 FAM240BA0A1B0GVZ2 78 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 ITGB1BP1O14713 200 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 LYRM1O43325 122 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 CD5LO43866 347 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 FCN3O75636 299 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 ARG1P05089 322 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 PGAM2P15259 253 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 PPP1CCP36873 323 aaKnown RBP8.28□□□□□ -1.08
CD44-207ENST00000425428 GPR12P47775 334 aa8.28□□□□□ -1.08
CD44-207ENST00000425428 FXYD4P59646 89 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms