RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 YLPM1P49750 1951 aaKnown RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 TRBV24-1A0A075B6N3 115 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 MSGN1A6NI15 193 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 NKX2-8O15522 239 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 WIPI1Q5MNZ9 446 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 ASCL5Q7RTU5 278 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 FER1L6-AS1Q8NA97 138 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 DHDHQ9UQ10 334 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 PLXNB3Q9ULL4 1909 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 GOLGB1Q14789 3259 aaKnown RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 IGHV1-69-2A0A0G2JMI3 117 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 KLF7O75840 302 aaPredicted RBP8.5□□□□□ -1.05
USP54-205ENST00000424265 ANOS1P23352 680 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 DUSP1P28562 367 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.5□□□□□ -1.05
USP54-205ENST00000424265 CISD2Q8N5K1 135 aaKnown RBP8.5□□□□□ -1.05
USP54-205ENST00000424265 OR5A2Q8NGI9 324 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 OR5B3Q8NH48 314 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 SMIM7Q9BQ49 75 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PLEKHJ1Q9NW61 149 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 SIGLEC7Q9Y286 467 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 CACNA1EQ15878 2313 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PRSS37A4D1T9 235 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PPP1CCP36873 323 aaKnown RBP8.5□□□□□ -1.05
USP54-205ENST00000424265 CDK5R1Q15078 307 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 ZG16BQ96DA0 208 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 GNRHR2Q96P88 292 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PLEK2Q9NYT0 353 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 KCNIP1Q9NZI2 227 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 ZNF850A8MQ14 1090 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 SPINK14Q6IE38 97 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 ASB10Q8WXI3 467 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 LPAR5Q9H1C0 372 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 CALHM2Q9HA72 323 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 C1orf123Q9NWV4 160 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 TNFSF11O14788 317 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 IGKV1D-16P01601 117 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 PLPPR5Q32ZL2 321 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 TGIF2LYQ8IUE0 185 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 ZNF441Q8N8Z8 693 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 Q96M85 177 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 EHFQ9NZC4 300 aa8.5□□□□□ -1.05
USP54-205ENST00000424265 A0A1W2PNR3 127 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 RND3P61587 244 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 SRSF4Q08170 494 aaKnown RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 FUT5Q11128 374 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 C2orf76Q3KRA6 126 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 NOXO1Q8NFA2 376 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 OR1K1Q8NGR3 316 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 NMNAT3Q96T66 252 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 PSMG3Q9BT73 122 aaPredicted RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 VCX2Q9H322 139 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 THYN1Q9P016 225 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 KIAA1456Q9P272 454 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 VSIG4Q9Y279 399 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 MRPS18BQ9Y676 258 aaKnown RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 CEBPZOSA8MTT3 80 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 NDUFB8O95169 186 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 ZNF136P52737 540 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 CBLN3Q6UW01 205 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 TRIB1Q96RU8 372 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 TTTY12Q9BZ98 90 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 SLC17A3O00476 420 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 PRKNO60260 465 aaPredicted RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 ZNF205O95201 554 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 PMCHP20382 165 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 ZP4Q12836 540 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 DMKNQ6E0U4 476 aaPredicted RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 TSEN54Q7Z6J9 526 aaKnown RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 HOXB13Q92826 284 aaPredicted RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 ELOVL3Q9HB03 270 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 LIPT2A6NK58 231 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 SAP30O75446 220 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 C1QL1O75973 258 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 SRP19P09132 144 aaKnown RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 SPIN3Q5JUX0 258 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 PLXDC2Q6UX71 529 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 STAC2Q6ZMT1 411 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 ZAR1Q86SH2 424 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 KTI12Q96EK9 354 aaPredicted RBP8.49□□□□□ -1.05
USP54-205ENST00000424265 FLRT3Q9NZU0 649 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 FRRS1LQ9P0K9 344 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 NSG2Q9Y328 171 aa8.49□□□□□ -1.05
USP54-205ENST00000424265 IGLV3-32A0A0A0MS00 114 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 TGFBR3LH3BV60 316 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 CLDN1O95832 211 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 KNG1P01042 644 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 HRASP01112 189 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 Q499Y3 187 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 MORN2Q502X0 79 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 C12orf54Q6X4T0 127 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 SULF2Q8IWU5 870 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 OR1B1Q8NGR6 318 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 MRGPRFQ96AM1 343 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 FFAR1O14842 300 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 PPP1CBP62140 327 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 C16orf47Q6ZP98 133 aaPredicted RBP8.48□□□□□ -1.05
USP54-205ENST00000424265 ZNF439Q8NDP4 499 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 OR10P1Q8NGE3 313 aa8.48□□□□□ -1.05
USP54-205ENST00000424265 OR10D3Q8NH80 312 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms