RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 ZNF205O95201 554 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ID3Q02535 119 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ZNF266Q14584 549 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 IGFBP7Q16270 282 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 ALKBH6Q3KRA9 238 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 MRGPRGQ86SM5 289 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 PLPPR1Q8TBJ4 325 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 SUN5Q8TC36 379 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 TMED6Q8WW62 240 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 DMRTA2Q96SC8 542 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 PARP11Q9NR21 331 aa11.45□□□□□ -0.58
LIMS1-205ENST00000410093 NKX2-6A6NCS4 301 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 A6NLC8 198 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 H0YL77 283 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 FABP6P51161 128 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 VAMP2P63027 116 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 RPL7L1Q6DKI1 246 aaKnown RBP11.44□□□□□ -0.58
LIMS1-205ENST00000410093 ZNF474Q6S9Z5 364 aaPredicted RBP11.44□□□□□ -0.58
LIMS1-205ENST00000410093 SPAG16Q8N0X2 631 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 OR2C3Q8N628 320 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 OR52M1Q8NGK5 317 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 GINS3Q9BRX5 216 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 C1QTNF6Q9BXI9 259 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 OR2S2Q9NQN1 319 aa11.44□□□□□ -0.58
LIMS1-205ENST00000410093 TLN1Q9Y490 2541 aaKnown RBP11.44□□□□□ -0.58
LIMS1-205ENST00000410093 CFAP46Q8IYW2 2715 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 ZNF705EA8MWA4 302 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 K7EM74 188 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 KCNAB3O43448 404 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 ADH4P08319 380 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 F2RL1P55085 397 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 KLF3P57682 345 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 TESK1Q15569 626 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 SWI5Q1ZZU3 235 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 TUSC1Q2TAM9 212 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 FAM219AQ8IW50 185 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 DMBX1Q8NFW5 382 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 IL1F10Q8WWZ1 152 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 NINJ1Q92982 152 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 ERGIC1Q969X5 290 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 S100PBPQ96BU1 408 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 LINC00052Q96N35 136 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 RAB40CQ96S21 281 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 C11orf1Q9H5F2 150 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 LYRM2Q9NU23 88 aaPredicted RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 ASF1BQ9NVP2 202 aa11.43□□□□□ -0.58
LIMS1-205ENST00000410093 RCL1Q9Y2P8 373 aaKnown RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 STRAPQ9Y3F4 350 aaKnown RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 RBM7Q9Y580 266 aaKnown RBP11.43□□□□□ -0.58
LIMS1-205ENST00000410093 HEATR1Q9H583 2144 aaKnown RBP11.42□□□□□ -0.58
LIMS1-205ENST00000410093 GCN1Q92616 2671 aaKnown RBP11.42□□□□□ -0.58
LIMS1-205ENST00000410093 IGLV3-9A0A075B6K5 115 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 A8MXE2 369 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 SRRM5B3KS81 715 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 FAM90A26D6RGX4 464 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 WRBO00258 174 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 ADAM20O43506 726 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 GLI4P10075 376 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 IL2RGP31785 369 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 CEACAM6P40199 344 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 NKX6-1P78426 367 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-205ENST00000410093 HTD2P86397 168 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 PJVKQ0ZLH3 352 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 Q6ZR03 302 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 ZNF645Q8N7E2 425 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 OR1S2Q8NGQ3 325 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 NARFLQ9H6Q4 476 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 COA4Q9NYJ1 87 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 OR14J1Q9UGF5 321 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 LAMP3Q9UQV4 416 aa11.42□□□□□ -0.58
LIMS1-205ENST00000410093 HELZ2Q9BYK8 2649 aaKnown RBP11.42□□□□□ -0.58
LIMS1-205ENST00000410093 TRIM77I1YAP6 450 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 PITX3O75364 302 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 GZMHP20718 246 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 GATA4P43694 442 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 CATR1Q13166 79 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 GALNT11Q8NCW6 608 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 NUP37Q8NFH4 326 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 LUZP4Q9P127 313 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 ZDHHC8Q9ULC8 765 aa11.41□□□□□ -0.58
LIMS1-205ENST00000410093 UMAD1C9J7I0 102 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 M0R1B8 84 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 SPINT2O43291 252 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 PSPNO60542 156 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 SPP1P10451 314 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 TNFSF4P23510 183 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 ZNF83P51522 516 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 TAS2R30P59541 319 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 RPL23AP62750 156 aaKnown RBP11.4□□□□□ -0.58
LIMS1-205ENST00000410093 EWSR1Q01844 656 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIMS1-205ENST00000410093 CR1LQ2VPA4 569 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 OR2Z1Q8NG97 314 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 LYPD6BQ8NI32 183 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 LRRC29Q8WV35 223 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 EDARADDQ8WWZ3 215 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 SNX22Q96L94 193 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 DIRC2Q96SL1 478 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 OR1A1Q9P1Q5 309 aa11.4□□□□□ -0.58
LIMS1-205ENST00000410093 CHD3Q12873 2000 aaKnown RBP11.4□□□□□ -0.59
LIMS1-205ENST00000410093 MGST3O14880 152 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms