RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ARL11Q969Q4 196 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 LIN7BQ9HAP6 207 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 DPM3Q9P2X0 92 aa22.71■■□□□ 1.23
HMGB1-205ENST00000399494 TSSC4Q9Y5U2 329 aaPredicted RBP22.71■■□□□ 1.23
HMGB1-205ENST00000399494 SMIM30A4D0T7 59 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 NPIPB11E5RHQ5 1161 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 GADD45AP24522 165 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 CD34P28906 385 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 C6orf183Q5T699 404 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 OR10A7Q8NGE5 316 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 KCTD7Q96MP8 289 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 LPAR5Q9H1C0 372 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 LINC00574Q9H8X3 128 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 RAB9BQ9NP90 201 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 PLEKHJ1Q9NW61 149 aa22.7■■□□□ 1.22
HMGB1-205ENST00000399494 A0A087X0M5 115 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 A0A1B0GX30 115 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 ORC5O43913 435 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 C6orf201Q7Z4U5 140 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 TPRA1Q86W33 373 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 SULT4A1Q9BR01 284 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 FAAP24Q9BTP7 215 aa22.69■■□□□ 1.22
HMGB1-205ENST00000399494 TMEM272A0A1B0GTI8 110 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 KRTAP10-11P60412 298 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 TRAT1Q6PIZ9 186 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 OR9G1Q8NH87 305 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 UBALD1Q8TB05 177 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 AKR1E2Q96JD6 320 aa22.68■■□□□ 1.22
HMGB1-205ENST00000399494 KMT2CQ8NEZ4 4911 aaKnown RBP22.68■■□□□ 1.22
HMGB1-205ENST00000399494 A0A0A6YYD4 124 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 SPINT2O43291 252 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 PF4P02776 101 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 LPLP06858 475 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 BRS3P32247 399 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 VEGFCP49767 419 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 TIMM50Q3ZCQ8 353 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 ABCA11PQ4W5N1 156 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 GAPTQ8N292 157 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 LEAP2Q969E1 77 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 CREB3L1Q96BA8 519 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 RCC1LQ96I51 464 aaKnown RBP22.67■■□□□ 1.22
HMGB1-205ENST00000399494 KCNIP1Q9NZI2 227 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 RAB22AQ9UL26 194 aa22.67■■□□□ 1.22
HMGB1-205ENST00000399494 NOTOA8MTQ0 251 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 C15orf65H3BRN8 121 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 SDCBPO00560 298 aaPredicted RBP22.66■■□□□ 1.22
HMGB1-205ENST00000399494 SOCS1O15524 211 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 IGLV1-47P01700 117 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 IGHV3-7P01780 117 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 AMY1AP04745 511 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 AMY2AP04746 511 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 CEACAM3P40198 252 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 GNG10P50151 68 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 HLA-DRB5Q30154 266 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 C10orf99Q6UWK7 81 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 PRR18Q8N4B5 295 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 OR56B1Q8NGI3 324 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 CYYR1Q96J86 154 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 RBM14Q96PK6 669 aaKnown RBP22.66■■□□□ 1.22
HMGB1-205ENST00000399494 SLC25A33Q9BSK2 321 aa22.66■■□□□ 1.22
HMGB1-205ENST00000399494 CHMP1AQ9HD42 196 aaPredicted RBP22.66■■□□□ 1.22
HMGB1-205ENST00000399494 AMMECR1Q9Y4X0 333 aaPredicted RBP22.66■■□□□ 1.22
HMGB1-205ENST00000399494 LEUTXA8MZ59 168 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 C12orf77C9JDV5 145 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 RCC1P18754 421 aaPredicted RBP22.65■■□□□ 1.22
HMGB1-205ENST00000399494 MXD1Q05195 221 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 UTF1Q5T230 341 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 SLC16A12Q6ZSM3 486 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 NR2C2APQ86WQ0 139 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 FAM89BQ8N5H3 189 aa22.65■■□□□ 1.22
HMGB1-205ENST00000399494 MRPL30Q8TCC3 161 aaKnown RBP22.65■■□□□ 1.22
HMGB1-205ENST00000399494 WI2-2373I1.2A0A1W2PRP0 233 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 J3QR06 171 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 LDLRAD4O15165 306 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 OR2F2O95006 317 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 SLC2A2P11168 524 aaPredicted RBP22.64■■□□□ 1.21
HMGB1-205ENST00000399494 SDC2P34741 201 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 ARHGDIBP52566 201 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 DEFB121Q5J5C9 76 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 OR52M1Q8NGK5 317 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 CAPSLQ8WWF8 208 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 CENPOQ9BU64 300 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 RNF167Q9H6Y7 350 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 PSG11Q9UQ72 335 aa22.64■■□□□ 1.21
HMGB1-205ENST00000399494 A0A0B4J203 849 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 SH2D7A6NKC9 451 aaPredicted RBP22.63■■□□□ 1.21
HMGB1-205ENST00000399494 BUB1B-PAK6H3BSN5 160 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 DUS4LO95620 317 aaKnown RBP22.63■■□□□ 1.21
HMGB1-205ENST00000399494 C11orf87Q6NUJ2 197 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 OR4X2Q8NGF9 303 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 TAF9BQ9HBM6 251 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 DAPK2Q9UIK4 370 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 HSF4Q9ULV5 492 aa22.63■■□□□ 1.21
HMGB1-205ENST00000399494 IGHV3-43A0A0B4J1X8 118 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 AIREO43918 545 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 HBZP02008 142 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 IGHV3-43DP0DP04 118 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 RAB6AP20340 208 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 PLA2G7Q13093 441 aa22.62■■□□□ 1.21
HMGB1-205ENST00000399494 SETD6Q8TBK2 473 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms