RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 STXBP6Q8NFX7 210 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 FAM222BQ8WU58 562 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 AQP10Q96PS8 301 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 LAMB1P07942 1786 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 COX7A1P24310 79 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 FAM216AQ8WUB2 273 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 NUDT16L1Q9BRJ7 211 aaKnown RBP10.36□□□□□ -0.75
SYNPO-202ENST00000394243 PMCHL2Q9BQD1 86 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 FAM157AC9JC47 383 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 C16orf47Q6ZP98 133 aaPredicted RBP10.36□□□□□ -0.75
SYNPO-202ENST00000394243 APCDD1LQ8NCL9 501 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 MRGPRX1Q96LB2 322 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 CISD1Q9NZ45 108 aaKnown RBP10.36□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF83P51522 516 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 OR6X1Q8NH79 312 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 VSTM2AQ8TAG5 236 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 ZNF418Q8TF45 676 aaPredicted RBP10.36□□□□□ -0.75
SYNPO-202ENST00000394243 MIEN1Q9BRT3 115 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 NPIPB8E9PQR5 432 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 NPIPB7O75200 414 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 ARF6P62330 175 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 C10orf126Q8N4M7 172 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 IP6K3Q96PC2 410 aa10.36□□□□□ -0.75
SYNPO-202ENST00000394243 PHIPQ8WWQ0 1821 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 RNASE1P07998 156 aaKnown RBP10.35□□□□□ -0.75
SYNPO-202ENST00000394243 FHITP49789 147 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 VAX1Q5SQQ9 334 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 C10orf35Q96D05 121 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 GABRG3Q99928 467 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 CACNA1SQ13698 1873 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 C7orf71A4D174 169 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 OR2A4O95047 310 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 RFLNBQ8N5W9 214 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 OR2A7Q96R45 310 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 DERL1Q9BUN8 251 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 MYF5P13349 255 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 P2RY4P51582 365 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 ATRAIDQ6UW56 229 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 BIVMQ86UB2 503 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 MFRPQ9BY79 579 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 CXXC4Q9H2H0 198 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 MPC1Q9Y5U8 109 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 RPL36A-HNRNPH2H7BZ11 118 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 IL4P05112 153 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 PPP1CAP62136 330 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 ZCCHC14Q8WYQ9 949 aaKnown RBP10.35□□□□□ -0.75
SYNPO-202ENST00000394243 PRNDQ9UKY0 176 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 AUP1Q9Y679 476 aa10.35□□□□□ -0.75
SYNPO-202ENST00000394243 ASXL3Q9C0F0 2248 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 KLF3P57682 345 aaPredicted RBP10.34□□□□□ -0.75
SYNPO-202ENST00000394243 ATG4DQ86TL0 474 aaPredicted RBP10.34□□□□□ -0.75
SYNPO-202ENST00000394243 NEU1Q99519 415 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 NPVFQ9HCQ7 196 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 PLCH1Q4KWH8 1693 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 TRAV38-1A0A0B4J264 116 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 TMEM189A5PLL7 270 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 DANCRP0C864 163 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 GALNSP34059 522 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 OR2I1PQ8NGU4 316 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 QTRT1Q9BXR0 403 aaKnown RBP10.34□□□□□ -0.75
SYNPO-202ENST00000394243 KLHDC2Q9Y2U9 406 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 IGKV3-7A0A075B6H7 116 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 IGHV3-21A0A0B4J1V1 117 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 PNLIPP16233 465 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 GZMMP51124 257 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 CXorf66Q5JRM2 361 aaPredicted RBP10.34□□□□□ -0.75
SYNPO-202ENST00000394243 RBKSQ9H477 322 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 BEX4Q9NWD9 120 aaPredicted RBP10.34□□□□□ -0.75
SYNPO-202ENST00000394243 PCOLCE2Q9UKZ9 415 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 CLDN16Q9Y5I7 305 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 A1L4Q6 167 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 STAG3L3P0CL85 134 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 CCL17Q92583 94 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 VSTM2LQ96N03 204 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 CCL27Q9Y4X3 112 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 PRSS2P07478 247 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 TM4SF19Q96DZ7 209 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 HES7Q9BYE0 225 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 MAST2Q6P0Q8 1798 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 CADM4Q8NFZ8 388 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 OR10AG1Q8NH19 301 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 Q8WTZ3 238 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 TJP1Q07157 1748 aa10.34□□□□□ -0.75
SYNPO-202ENST00000394243 A0A1W2PPC1 479 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 NUDT3O95989 172 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 RNPS1Q15287 305 aaKnown RBP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 MRGPRX3Q96LB0 322 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 TMEM70Q9BUB7 260 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 SMOC1Q9H4F8 434 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 COA4Q9NYJ1 87 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 GPR132Q9UNW8 380 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 A0A1B0GWB2 263 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 J3QR06 171 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 CA1P00915 261 aaPredicted RBP10.33□□□□□ -0.76
SYNPO-202ENST00000394243 FCGR3AP08637 254 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 ST6GALNAC6Q969X2 333 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 ELSPBP1Q96BH3 223 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 SCN9AQ15858 1988 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 HPRT1P00492 218 aa10.33□□□□□ -0.76
SYNPO-202ENST00000394243 CBLN1P23435 193 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms