RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ZNF726P1Q15940 193 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF600Q6ZNG1 722 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 CYP2G1PQ6ZSU1 146 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 ZBTB34Q8NCN2 500 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 RNASEH2CQ8TDP1 164 aaKnown RBP8.5□□□□□ -1.05
COL17A1-203ENST00000393211 FRZBQ92765 325 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF845Q96IR2 970 aaPredicted RBP8.5□□□□□ -1.05
COL17A1-203ENST00000393211 POM121L2Q96KW2 1035 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 PRDM13Q9H4Q3 707 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF665Q9H7R5 613 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 TMEM9BQ9NQ34 198 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 PRDM6Q9NQX0 595 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 CACNG5Q9UF02 275 aa8.5□□□□□ -1.05
COL17A1-203ENST00000393211 RANBP2P49792 3224 aaKnown RBP8.5□□□□□ -1.05
COL17A1-203ENST00000393211 NCKAP5O14513 1909 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 MAP1LC3B2A6NCE7 125 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 ZFP92A6NM28 416 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 J3QT63 122 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 DVL1O14640 695 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 GDF9O60383 454 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 IGKV1-39P01597 117 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 IGKV1D-39P04432 117 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 SSTP61278 116 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 Q0VFX4 171 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 MSMO1Q15800 293 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 COA6Q5JTJ3 125 aaKnown RBP8.49□□□□□ -1.05
COL17A1-203ENST00000393211 WDR25Q64LD2 544 aaPredicted RBP8.49□□□□□ -1.05
COL17A1-203ENST00000393211 C20orf204Q6ZNR8 217 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 Q6ZRM9 215 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 LILRB2Q8N423 598 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 OR10A7Q8NGE5 316 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 OR51H1Q8NH63 302 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 TAF15Q92804 592 aaKnown RBP eCLIP8.49□□□□□ -1.05
COL17A1-203ENST00000393211 GPHA2Q96T91 129 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 FAM173AQ9BQD7 235 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 RSG1Q9BU20 258 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 GPR61Q9BZJ8 451 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 MAP1LC3BQ9GZQ8 125 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 DEPPQ9NTK1 212 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 IL36RNQ9UBH0 155 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 B4GALT7Q9UBV7 327 aa8.49□□□□□ -1.05
COL17A1-203ENST00000393211 TRBV23-1A0A0A0MS06 115 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 CEBPZOSA8MTT3 80 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 TSTD3H0UI37 97 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF737O75373 536 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 IGKV1-5P01602 117 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 IGLV2-14P01704 120 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 HLA-HP01893 362 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 CCNOP22674 350 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 GPX4P36969 197 aaPredicted RBP8.48□□□□□ -1.05
COL17A1-203ENST00000393211 LHX2P50458 406 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 TMEM241Q24JQ0 296 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 LBHQ53QV2 105 aaPredicted RBP8.48□□□□□ -1.05
COL17A1-203ENST00000393211 PEAR1Q5VY43 1037 aaPredicted RBP8.48□□□□□ -1.05
COL17A1-203ENST00000393211 Q6P435 159 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 LCN15Q6UWW0 184 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 TMEM14EPQ6UXP3 125 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF497Q6ZNH5 498 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 C5orf24Q7Z6I8 188 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 HAPLN4Q86UW8 402 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 TMEM183AQ8IXX5 376 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 BATF2Q8N1L9 274 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 PRRG4Q9BZD6 226 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 OR51I2Q9H344 312 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF552Q9H707 407 aaPredicted RBP8.48□□□□□ -1.05
COL17A1-203ENST00000393211 MANBALQ9NQG1 85 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 SLC39A9Q9NUM3 307 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 UFSP2Q9NUQ7 469 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 CRIM1Q9NZV1 1036 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 SIT1Q9Y3P8 196 aa8.48□□□□□ -1.05
COL17A1-203ENST00000393211 SMCO3A2RU48 225 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 H3BP45 60 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 HSPB6O14558 160 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 HS3ST1O14792 307 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 KBTBD11O94819 623 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 NXPH3O95157 252 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PFN1P07737 140 aaKnown RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 METTL15P1P0C7V9 234 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 OTX2P32243 289 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PSMB3P49720 205 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 CLDN18P56856 261 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 MEF2BQ02080 365 aaPredicted RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 SLC38A11Q08AI6 406 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ARL16Q0P5N6 197 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 TESK1Q15569 626 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ZNF585BQ52M93 769 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 CDCP2Q5VXM1 449 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 NCR3LG1Q68D85 454 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 REC114Q7Z4M0 266 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 TCTEX1D1Q8N7M0 179 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 RDH5Q92781 318 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 APH1AQ96BI3 265 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ANAPC16Q96DE5 110 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 BTF3L4Q96K17 158 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 OR4C12Q96R67 309 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 ZPBPQ9BS86 351 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 SMOC1Q9H4F8 434 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 MBNL3Q9NUK0 354 aaKnown RBP8.47□□□□□ -1.05
COL17A1-203ENST00000393211 PRSS50Q9UI38 385 aa8.47□□□□□ -1.05
COL17A1-203ENST00000393211 WIPI2Q9Y4P8 454 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms