RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 USP9XQ93008 2570 aaPredicted RBP10.51□□□□□ -0.73
CIITA-202ENST00000381835 SHISA9B4DS77 424 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 SIAH2O43255 324 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ACAA1P09110 424 aaPredicted RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 OR4A8P0C604 315 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 TMEM33P57088 247 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ADIPOQQ15848 244 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 FAM209BQ5JX69 171 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ASCL4Q6XD76 172 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 SGPP2Q8IWX5 399 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 DMRTC2Q8IXT2 367 aaPredicted RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 SECTM1Q8WVN6 248 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.5□□□□□ -0.73
CIITA-202ENST00000381835 MTCH1Q9NZJ7 389 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 LSM5Q9Y4Y9 91 aaKnown RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 FAM157AC9JC47 383 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 DEDDO75618 318 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 RHBDL1O75783 438 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 SCGB1D2O95969 90 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 PLAUP00749 431 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 IFNA21P01568 189 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 GAPDHP04406 335 aaKnown RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 GLAP06280 429 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 BCL3P20749 454 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 GABRR1P24046 479 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 HMGN3Q15651 99 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 MKXQ8IYA7 352 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 SCCPDHQ8NBX0 429 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 NANPQ8TBE9 248 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ZNF488Q96MN9 340 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ZNF2Q9BSG1 426 aaPredicted RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 PARP12Q9H0J9 701 aaKnown RBP10.5□□□□□ -0.73
CIITA-202ENST00000381835 CXXC4Q9H2H0 198 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 PLK3Q9H4B4 646 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 ZNF442Q9H7R0 627 aa10.5□□□□□ -0.73
CIITA-202ENST00000381835 LRBAP50851 2863 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 LRP5LA4QPB2 252 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 SERPINE3A8MV23 424 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 C3orf80F5H4A9 247 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 TRAPPC2LH3BP13 241 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 CDIPTO14735 213 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 TSPAN15O95858 294 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 S100A9P06702 114 aaKnown RBP10.49□□□□□ -0.73
CIITA-202ENST00000381835 PAX6P26367 422 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 TAF9Q16594 264 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 PIGYQ3MUY2 71 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 FBXL14Q8N1E6 418 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 HIST1H2BAQ96A08 127 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 HS3ST6Q96QI5 342 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 EGLN1Q9GZT9 426 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 UFSP2Q9NUQ7 469 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 IL36GQ9NZH8 169 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 RALYQ9UKM9 306 aaKnown RBP10.49□□□□□ -0.73
CIITA-202ENST00000381835 RNF115Q9Y4L5 304 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 A6NLC8 198 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 FOXI3A8MTJ6 420 aaPredicted RBP10.49□□□□□ -0.73
CIITA-202ENST00000381835 E7EQL1 145 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 J3QT63 122 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 SPRY3O43610 288 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 ECI1P42126 302 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 PRAMEF6Q5VXH4 476 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 SAXO1Q8IYX7 474 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 OSR2Q8N2R0 312 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 Q96M66 194 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 FAM212BQ9NTI7 297 aaPredicted RBP10.49□□□□□ -0.73
CIITA-202ENST00000381835 ST3GAL6Q9Y274 331 aa10.49□□□□□ -0.73
CIITA-202ENST00000381835 TMEM210A6NLX4 147 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 VSTM5A8MXK1 200 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 SNRNP70P08621 437 aaKnown RBP10.48□□□□□ -0.73
CIITA-202ENST00000381835 IL24Q13007 206 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 ARL6IP1Q15041 203 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 PDCD1Q15116 288 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 GGNBP1Q5YKI7 109 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 TM2D1Q9BX74 207 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 PKIBQ9C010 78 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 DOPEY1Q5JWR5 2465 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 ARFGEF3Q5TH69 2177 aa10.48□□□□□ -0.73
CIITA-202ENST00000381835 IGKV1D-8A0A087WSZ0 117 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 C5orf52A6NGY3 159 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 DEFB108AA8MXU0 73 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 C19orf84I3L1E1 186 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 GEMIN2O14893 280 aaKnown RBP10.47□□□□□ -0.73
CIITA-202ENST00000381835 ST8SIA5O15466 376 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 S100A8P05109 93 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 ZNF44P15621 663 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 ZNF616Q08AN1 781 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 RNF212Q495C1 297 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 MIDNQ504T8 468 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 AWAT1Q58HT5 328 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 CLEC9AQ6UXN8 241 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 ZNF826PQ6ZT77 177 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 SLC16A13Q7RTY0 426 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 C6orf201Q7Z4U5 140 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 ZNF561Q8N587 486 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 UBAC2Q8NBM4 344 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 LYPD6BQ8NI32 183 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 PLEKHJ1Q9NW61 149 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 CISD1Q9NZ45 108 aaKnown RBP10.47□□□□□ -0.73
CIITA-202ENST00000381835 ZNF581Q9P0T4 197 aa10.47□□□□□ -0.73
CIITA-202ENST00000381835 A0A1B0GWJ7 208 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms