RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZNF616Q08AN1 781 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 GNMTQ14749 295 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 TMEM182Q6ZP80 229 aaPredicted RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 Q6ZT83 130 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 RIMS4Q9H426 269 aaPredicted RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 FAM212BQ9NTI7 297 aaPredicted RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 DVL1P1P54792 670 aaPredicted RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 UBE2NP61088 152 aaKnown RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 SRPXP78539 464 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 C14orf79Q96F83 325 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 C19orf12Q9NSK7 152 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 NDRG3Q9UGV2 375 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 IQCF6A8MYZ5 107 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 K7N7A8 449 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 DYNLT3P51808 116 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF585BQ52M93 769 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 AVPI1Q5T686 147 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 TMEM217Q8N7C4 229 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 C5orf30Q96GV9 206 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 TAAR6Q96RI8 345 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 CDH20Q9HBT6 801 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 PPP1R3CQ9UQK1 317 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 AKAP13Q12802 2813 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 BORCS7-ASMTA0A0B4J1R7 106 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 C1QTNF9BB2RNN3 333 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 NQO2P16083 231 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 ATP6V0CP27449 155 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF146Q15072 292 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 OR10V1Q8NGI7 309 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 OR5C1Q8NGR4 320 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 DKK4Q9UBT3 224 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 IGKV1-5P01602 117 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 IGKV3-15P01624 115 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 NBL1P41271 181 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 RUNX1Q01196 453 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 CYB5R2Q6BCY4 276 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 CMTM1Q8IZ96 169 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 RHOVQ96L33 236 aa11.28□□□□□ -0.6
CCDC3-202ENST00000378839 NPIPB11E5RHQ5 1161 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 H3BP45 60 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 RAC2P15153 192 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 PLA2G5P39877 138 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 FABP9Q0Z7S8 132 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 NCMAPQ5T1S8 102 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 SEM1Q6ZVN7 128 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 PLEKHF2Q9H8W4 249 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 HES4Q9HCC6 221 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 ZFP57Q9NU63 452 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 MBNL3Q9NUK0 354 aaKnown RBP11.27□□□□□ -0.6
CCDC3-202ENST00000378839 OR14J1Q9UGF5 321 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 METRNQ9UJH8 293 aa11.27□□□□□ -0.6
CCDC3-202ENST00000378839 KIAA2026Q5HYC2 2103 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 MEX3AA1L020 520 aaKnown RBP11.27□□□□□ -0.61
CCDC3-202ENST00000378839 NXPH2O95156 264 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 TSPAN15O95858 294 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 COX5AP20674 150 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 CAMLGP49069 296 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 RARRES2Q99969 163 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 TRAPPC2LQ9UL33 140 aa11.27□□□□□ -0.61
CCDC3-202ENST00000378839 GPR37O15354 613 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 SNAPINO95295 136 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 HEXAP06865 529 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 OR8G1Q15617 311 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 GUK1Q16774 197 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 MSMPQ1L6U9 139 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 PRAMEF6Q5VXH4 476 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 SP5Q6BEB4 398 aaPredicted RBP11.26□□□□□ -0.61
CCDC3-202ENST00000378839 TNFSF13O75888 250 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 DEFB109BQ30KR1 87 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 PDZD11Q5EBL8 140 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 INO80CQ6PI98 192 aaPredicted RBP11.26□□□□□ -0.61
CCDC3-202ENST00000378839 OR1L1Q8NH94 360 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 FAM213BQ8TBF2 198 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 CA5BP1Q8WTZ4 195 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 PFDN5Q99471 154 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 OPN3Q9H1Y3 402 aaPredicted RBP11.26□□□□□ -0.61
CCDC3-202ENST00000378839 MSL2Q9HCI7 577 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 WIPI2Q9Y4P8 454 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 HAND1O96004 215 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 CECR9P0C854 216 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 CD82P27701 267 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 CEACAM6P40199 344 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 TGFBR3Q03167 851 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 HMGN3Q15651 99 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 C21orf62-AS1Q17RA5 79 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 SPSB3Q6PJ21 355 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 ZNF610Q8N9Z0 462 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 IL22RA2Q969J5 263 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 TREM2Q9NZC2 230 aa11.26□□□□□ -0.61
CCDC3-202ENST00000378839 PTPRBP23467 1997 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 DUXBA0A1W2PPF3 345 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 J3QW42 95 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 AQP7O14520 342 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 PRH1P02810 166 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 OBP2BQ9NPH6 170 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 LUZP4Q9P127 313 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 DCHS1Q96JQ0 3298 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 SNRNP70P08621 437 aaKnown RBP11.25□□□□□ -0.61
CCDC3-202ENST00000378839 AESQ08117 197 aa11.25□□□□□ -0.61
CCDC3-202ENST00000378839 ARL16Q0P5N6 197 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms