RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 IRF2P14316 349 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 RAB4AP20338 218 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 F2RP25116 425 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 FUT6P51993 359 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 OR8B8Q15620 311 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 C10orf128Q5T292 105 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 C1orf194Q5T5A4 169 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.56□□□□□ -0.24
CKAP4-201ENST00000378026 TGIF2LYQ8IUE0 185 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 CLEC18CQ8NCF0 446 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 OR10V1Q8NGI7 309 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 ZNF845Q96IR2 970 aaPredicted RBP13.56□□□□□ -0.24
CKAP4-201ENST00000378026 MMP17Q9ULZ9 603 aa13.56□□□□□ -0.24
CKAP4-201ENST00000378026 CD300LBA8K4G0 201 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 CRYGSP22914 178 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 PSMB3P49720 205 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 CCR5P51681 352 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 HLA-BQ31612 363 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 ASCL4Q6XD76 172 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 OR5D13Q8NGL4 314 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 TMEM54Q969K7 222 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 ERRFI1Q9UJM3 462 aaPredicted RBP13.55□□□□□ -0.24
CKAP4-201ENST00000378026 GRIFINA4D1Z8 144 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 C1QTNF9BB2RNN3 333 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 HPRT1P00492 218 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 RPLP1P05386 114 aaKnown RBP13.55□□□□□ -0.24
CKAP4-201ENST00000378026 CCKARP32238 428 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 PDLIM4P50479 330 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 TOMM20LQ6UXN7 152 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 RAB40CQ96S21 281 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 TRAPPC1Q9Y5R8 145 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 SYNGR3O43761 229 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 TIAF1O95411 115 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 PDGFBP01127 241 aaPredicted RBP13.55□□□□□ -0.24
CKAP4-201ENST00000378026 GCH1P30793 250 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 HIST1H3AP68431 136 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 LRRC75BQ2VPJ9 315 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 ACOT6Q3I5F7 207 aaPredicted RBP13.55□□□□□ -0.24
CKAP4-201ENST00000378026 FGFBP3Q8TAT2 258 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 ZNF501Q96CX3 271 aaPredicted RBP13.55□□□□□ -0.24
CKAP4-201ENST00000378026 GPR27Q9NS67 375 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 PPP1R3CQ9UQK1 317 aa13.55□□□□□ -0.24
CKAP4-201ENST00000378026 H0Y980 276 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 TNFSF11O14788 317 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 HS3ST1O14792 307 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 DMRTA1Q5VZB9 504 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 TCF23Q7RTU1 214 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 OR10J5Q8NHC4 309 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 HIPK2Q9H2X6 1198 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 PAM16Q9Y3D7 125 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 RBM7Q9Y580 266 aaKnown RBP13.54□□□□□ -0.24
CKAP4-201ENST00000378026 KIAA1324LA8MWY0 1029 aaPredicted RBP13.54□□□□□ -0.24
CKAP4-201ENST00000378026 PAGE4O60829 102 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 CD38P28907 300 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 PLXDC1Q8IUK5 500 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 SGCZQ96LD1 299 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 DIRC2Q96SL1 478 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 WDR61Q9GZS3 305 aaKnown RBP13.54□□□□□ -0.24
CKAP4-201ENST00000378026 PARD6AQ9NPB6 346 aa13.54□□□□□ -0.24
CKAP4-201ENST00000378026 ZNF816-ZNF321PA0A0X1KG74 233 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 PGPEP1LA6NFU8 196 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 LILRA1O75019 489 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 ZFAND5O76080 213 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 CRYAAP02489 173 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 HOXA6P31267 233 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 TFPI2P48307 235 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 DCAF10Q5QP82 559 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 FAM27BQ5VT28 67 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 C20orf204Q6ZNR8 217 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 Q6ZSR3 168 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 RDH5Q92781 318 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 R3HDM4Q96D70 268 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 RASL10BQ96S79 203 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 DEFB126Q9BYW3 111 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 RNF150Q9ULK6 438 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 IGHV3-9P01782 118 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 CELA2AP08217 269 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 SELEP16581 610 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 IL3RAP26951 378 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 GPM6AP51674 278 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 HBG1P69891 147 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 HBG2P69892 147 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 ARSJQ5FYB0 599 aaPredicted RBP13.53□□□□□ -0.24
CKAP4-201ENST00000378026 ACSM6Q6P461 480 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 TAF15Q92804 592 aaKnown RBP eCLIP13.53□□□□□ -0.24
CKAP4-201ENST00000378026 CBY1Q9Y3M2 126 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 FREM2Q5SZK8 3169 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 COL5A1P20908 1838 aaPredicted RBP13.53□□□□□ -0.24
CKAP4-201ENST00000378026 EXPH5Q8NEV8 1989 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 TMEM210A6NLX4 147 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 HNF1AP20823 631 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 OR10J1P30954 320 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 SERF2P84101 59 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 PSG4Q00888 419 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 ZIC4Q8N9L1 334 aa13.53□□□□□ -0.24
CKAP4-201ENST00000378026 FRYQ5TBA9 3013 aa13.52□□□□□ -0.24
CKAP4-201ENST00000378026 DUXBA0A1W2PPF3 345 aa13.52□□□□□ -0.24
CKAP4-201ENST00000378026 EPOPA6NHQ4 379 aa13.52□□□□□ -0.24
CKAP4-201ENST00000378026 NTF4P34130 210 aa13.52□□□□□ -0.24
CKAP4-201ENST00000378026 SPACA9Q96E40 222 aaPredicted RBP13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms