RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 EXTL1Q92935 676 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 HS3ST6Q96QI5 342 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 RAB40CQ96S21 281 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 IMMP2LQ96T52 175 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 WDR61Q9GZS3 305 aaKnown RBP5.8□□□□□ -1.48
VPS39-202ENST00000348544 SLC25A22Q9H936 323 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 ASCL3Q9NQ33 180 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 MANBALQ9NQG1 85 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 GPR27Q9NS67 375 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 IL36GQ9NZH8 169 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 PXMP4Q9Y6I8 212 aa5.8□□□□□ -1.48
VPS39-202ENST00000348544 GRIFINA4D1Z8 144 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 C1QTNF9BB2RNN3 333 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 SIAH2O43255 324 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 TCF21O43680 179 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 NRASP01111 189 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1-39P01597 117 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1D-39P04432 117 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 PSG2P11465 335 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 TCF23Q7RTU1 214 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 MYPOPQ86VE0 399 aaPredicted RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR10V1Q8NGI7 309 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR1K1Q8NGR3 316 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR4F5Q8NH21 305 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 TMEM54Q969K7 222 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 WDYHV1Q96HA8 205 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR4F4Q96R69 305 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 CFHR5Q9BXR6 569 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 SLC39A9Q9NUM3 307 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 TMEM106BQ9NUM4 274 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 AURKAIP1Q9NWT8 199 aaPredicted RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 PAM16Q9Y3D7 125 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 PPIAL4AQ9Y536 164 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 TRAPPC1Q9Y5R8 145 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 IGHV3-15A0A0B4J1V0 119 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 A0A0U1RQK1 487 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 UBE2L5PA0A1B0GUS4 154 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 ZNF320A2RRD8 509 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 LILRA5A6NI73 299 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 C5orf67F2Z3F1 127 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 SYNGR2O43760 224 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 NAPSAO96009 420 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 WNT2P09544 360 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 GABRG2P18507 467 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 F2RP25116 425 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 CD82P27701 267 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 ADMP35318 185 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 COMPP49747 757 aaPredicted RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 UBE2NP61088 152 aaKnown RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 LCN2P80188 198 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 Q6ZS49 121 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 NFAM1Q8NET5 270 aaPredicted RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR10G3Q8NGC4 313 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 OR51H1Q8NH63 302 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 RNASE8Q8TDE3 154 aaKnown RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 TAF15Q92804 592 aaKnown RBP eCLIP5.79□□□□□ -1.48
VPS39-202ENST00000348544 SPTSSAQ969W0 71 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 RBM24Q9BX46 236 aaKnown RBP5.79□□□□□ -1.48
VPS39-202ENST00000348544 DNAJC4Q9NNZ3 241 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 PSENENQ9NZ42 101 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 CACNG5Q9UF02 275 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 RNF114Q9Y508 228 aa5.79□□□□□ -1.48
VPS39-202ENST00000348544 LOC102725191A0A1B0GVB3 256 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 TCRBV21S2A2A0A5A6 115 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 MLNRO43193 412 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 DHHO43323 396 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 TLX3O43711 291 aaPredicted RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 SYNGR3O43761 229 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 DEFA4P12838 97 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 DRD1P21728 446 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 GUCA1AP43080 201 aaPredicted RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 PSMB3P49720 205 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 RBX1P62877 108 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 TRIM61Q5EBN2 209 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ZNF468Q5VIY5 522 aaPredicted RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 NUFIP2Q7Z417 695 aaKnown RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 OR2M3Q8NG83 312 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 NEK7Q8TDX7 302 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 HLA-CQ95604 372 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 PINX1Q96BK5 328 aaKnown RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 IL36RNQ9UBH0 155 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 SPTBN5Q9NRC6 3674 aaKnown RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 ASXL3Q9C0F0 2248 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 IGLV3-32A0A0A0MS00 114 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 NDUFB8O95169 186 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 PDGFBP01127 241 aaPredicted RBP5.78□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1-5P01602 117 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 PATE4P0C8F1 98 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 SLC25A6P12236 298 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 EGR1P18146 543 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 RAB7AP51149 207 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 KCNIP4Q6PIL6 250 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 PCSK4Q6UW60 755 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 LINC01551Q86U37 167 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ZDHHC23Q8IYP9 409 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 C11orf42Q8N5U0 333 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ZNF611Q8N823 705 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ZNF114Q8NC26 417 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 CMTM2Q8TAZ6 248 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 UCN2Q96RP3 112 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms