RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NMES1Q9C002 83 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 TMEM165Q9HC07 324 aa8.65□□□□□ -1.02
USP54-201ENST00000339859 IGHV3OR16-10A0A075B7F0 116 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 PPOXP50336 477 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 ZNF787Q6DD87 383 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 SLC51BQ86UW2 128 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 SLIRPQ9GZT3 109 aaKnown RBP8.65□□□□□ -1.03
USP54-201ENST00000339859 DKK4Q9UBT3 224 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 OR51B2Q9Y5P1 312 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 KIAA1549LQ6ZVL6 1849 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 OR5H14A6NHG9 310 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 COMMD7Q86VX2 200 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 NTNG2Q96CW9 530 aa8.65□□□□□ -1.03
USP54-201ENST00000339859 UBE2L5PA0A1B0GUS4 154 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 A6NNC1 897 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 H0YL77 283 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 AGPAT2O15120 278 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ATP6V1FQ16864 119 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 C3orf36Q3SXR2 165 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ACOT7LQ6ZUV0 252 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 TMUB2Q71RG4 321 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ZNF649Q9BS31 505 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 HRH4Q9H3N8 390 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 UQCC1Q9NVA1 299 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 S100A11P31949 105 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 TMEM182Q6ZP80 229 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 Q9N2K0 584 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 CACNA1IQ9P0X4 2223 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ZDBF2Q9HCK1 2354 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 A0A0U1RQK1 487 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ZNF320A2RRD8 509 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 OR7C2O60412 319 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 WISP1O95388 367 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 OPN1MWP04001 364 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 OPN1MW2P0DN77 364 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 OPN1MW3P0DN78 364 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 PAFAH1B2P68402 229 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 BAK1Q16611 211 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 DHRS7BQ6IAN0 325 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 LFNGQ8NES3 379 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 Q96M66 194 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 RNF2Q99496 336 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 URB1O60287 2271 aaKnown RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 DENND4CQ5VZ89 1909 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 HAX1O00165 279 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 SNRNP70P08621 437 aaKnown RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 NPBWR1P48145 328 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 CRYBA2P53672 197 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ZNF154Q13106 437 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 KDF1Q8NAX2 398 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 RSRP1Q9BUV0 290 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 LPAR5Q9H1C0 372 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 KNTC1P50748 2209 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 DUXBA0A1W2PPF3 345 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 CXorf66Q5JRM2 361 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 FAM166AQ6J272 317 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 ETV3LQ6ZN32 361 aa8.64□□□□□ -1.03
USP54-201ENST00000339859 NCCRP1Q6ZVX7 275 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 HDHD3Q9BSH5 251 aaPredicted RBP8.64□□□□□ -1.03
USP54-201ENST00000339859 ARHGEF17Q96PE2 2063 aaPredicted RBP8.63□□□□□ -1.03
USP54-201ENST00000339859 NUPL2O15504 423 aaKnown RBP8.63□□□□□ -1.03
USP54-201ENST00000339859 S100A2P29034 98 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 PTPRSQ13332 1948 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 A0A087WV48 116 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 SLC38A11Q08AI6 406 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 TIGITQ495A1 244 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 KCNIP4Q6PIL6 250 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 IGFL2Q6UWQ7 119 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 CENPVQ7Z7K6 275 aaPredicted RBP8.63□□□□□ -1.03
USP54-201ENST00000339859 Q8WTZ3 238 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 VOPP1Q96AW1 172 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 NDUFS8O00217 210 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 ALX3O95076 343 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 IGHV1-46P01743 117 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 GGNBP1Q5YKI7 109 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 C15orf54Q8N8G6 183 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 OR1L1Q8NH94 360 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 NPAS1Q99742 590 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 NRIP2Q9BQI9 281 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 BIN3Q9NQY0 253 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 CEACAM8P31997 349 aaPredicted RBP8.63□□□□□ -1.03
USP54-201ENST00000339859 H3F3AP84243 136 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 PPP1R1AQ13522 171 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 SPINK9Q5DT21 86 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 UNQ9370/PRO34162Q6UXP9 181 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 CALHM1Q8IU99 346 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 MMD2Q8IY49 270 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 OR52B4Q8NGK2 314 aa8.63□□□□□ -1.03
USP54-201ENST00000339859 F8W036 122 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 WNT9BO14905 357 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 EFNB2P52799 333 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 NKX2-5P52952 324 aaPredicted RBP8.62□□□□□ -1.03
USP54-201ENST00000339859 LIAT1Q6ZQX7 453 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 PQLC2LA1A4F0 135 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 DUS4LO95620 317 aaKnown RBP8.62□□□□□ -1.03
USP54-201ENST00000339859 PF4V1P10720 104 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 G6PCP35575 357 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 RPL27AP46776 148 aaKnown RBP8.62□□□□□ -1.03
USP54-201ENST00000339859 GLIPR1P48060 266 aa8.62□□□□□ -1.03
USP54-201ENST00000339859 ZNF474Q6S9Z5 364 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms