RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 AHRRA9YTQ3 701 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 F2Z2F3 143 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 VAMP5O95183 116 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 MPZL1O95297 269 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 IFI6P09912 130 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 YPEL3P61236 119 aaPredicted RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 ZP4Q12836 540 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 MRPL49Q13405 166 aaKnown RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 NNATQ16517 81 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 DAZLQ92904 295 aaKnown RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 SIGLEC12Q96PQ1 595 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 PLA2G3Q9NZ20 509 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 HEBP2Q9Y5Z4 205 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TRRAPQ9Y4A5 3859 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 IGLC7A0M8Q6 106 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 H0YGG7 62 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 HS3ST1O14792 307 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 JMJD7P0C870 316 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 CTLA4P16410 223 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 AADACP22760 399 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 GABRA3P34903 492 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 OR3A4PP47883 348 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 CLDN18P56856 261 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 ARF3P61204 181 aaPredicted RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 ACSF3Q4G176 576 aaPredicted RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 C1orf174Q8IYL3 243 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TMEM252Q8N6L7 170 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 OR52N5Q8NH56 324 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 TOMM40LQ969M1 308 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 RPUSD4Q96CM3 377 aaKnown RBP4.78□□□□□ -1.64
CSDE1-202ENST00000339438 WWTR1Q9GZV5 400 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 PLK3Q9H4B4 646 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 GNG13Q9P2W3 67 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 NAT8Q9UHE5 227 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 PRSS50Q9UI38 385 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 SPTBN4Q9H254 2564 aa4.78□□□□□ -1.64
CSDE1-202ENST00000339438 APCP25054 2843 aa4.78□□□□□ -1.65
CSDE1-202ENST00000339438 FAM230AA0A1W2PPH8 454 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 OR5B21A6NL26 309 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 TRAPPC6AO75865 159 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 KBTBD11O94819 623 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 UCP1P25874 307 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 BMI1P35226 326 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ADMP35318 185 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 RBMXP38159 391 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 LCN2P80188 198 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF266Q14584 549 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 FAM189A2Q15884 450 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 LDLRAD2Q5SZI1 272 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 TSPO2Q5TGU0 170 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 FBXO42Q6P3S6 717 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 WDYHV1Q96HA8 205 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 OR6C1Q96RD1 312 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NUDT22Q9BRQ3 303 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 RPRMQ9NS64 109 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 SMPXQ9UHP9 88 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 PRKDCP78527 4128 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 LILRA5A6NI73 299 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 CBY3A6NI87 242 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF705FA8MVS1 300 aaPredicted RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 KIAA1324LA8MWY0 1029 aaPredicted RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 P2RY10O00398 339 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 SH2D1BO14796 132 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF705DP0CH99 300 aaPredicted RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ZNF705BP0CI00 300 aaPredicted RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NPPCP23582 126 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 SFTPDP35247 375 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 SRP14P37108 136 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 OR1D4P47884 311 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 LGALS7P47929 136 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 DYNLT3P51808 116 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 TAS2R30P59541 319 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 CLEC12BQ2HXU8 276 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 FAM69BQ5VUD6 431 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 LIAT1Q6ZQX7 453 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 C1QL2Q7Z5L3 287 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 OR5C1Q8NGR4 320 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 VN1R17PQ8TDU5 208 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 VAMP8Q9BV40 100 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 RBM24Q9BX46 236 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 BANF2Q9H503 90 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NAA60Q9H7X0 242 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 DAPP1Q9UN19 280 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 MRPS16Q9Y3D3 137 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 WIPI2Q9Y4P8 454 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 TPRP12270 2363 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 IGHV2-26A0A0B4J1V2 119 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 IGHV5-51A0A0C4DH38 117 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 IGKV1-9A0A0C4DH69 117 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 CYR61O00622 381 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 ST8SIA3O43173 380 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 CGAP01215 116 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 PPIAL4GP0DN37 164 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NKX2-1P43699 371 aaPredicted RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NPBWR2P48146 333 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 TAS2R46P59540 309 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 RNPS1Q15287 305 aaKnown RBP4.77□□□□□ -1.65
CSDE1-202ENST00000339438 NSDHLQ15738 373 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 RNF44Q7L0R7 432 aa4.77□□□□□ -1.65
CSDE1-202ENST00000339438 MRGPRGQ86SM5 289 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms