RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FAAP20Q6NZ36 180 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 BATF2Q8N1L9 274 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ST6GALNAC3Q8NDV1 305 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 LHX4Q969G2 390 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 IL22RA2Q969J5 263 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF837Q96EG3 531 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 MEGF10Q96KG7 1140 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 NEURL2Q9BR09 285 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 UQCC1Q9NVA1 299 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ANKRD36A6QL64 1941 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 F8P00451 2351 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 LIPFP07098 398 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 IGHV1-2P23083 117 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM267Q0VDI3 215 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 PLPPR2Q96GM1 343 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SEBOXQ9HB31 216 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 A0A0G2JK05 382 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SRRM5B3KS81 715 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 J3QRE1 110 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 RAB29O14966 203 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 MPC2O95563 127 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 H2AFB1P0C5Y9 115 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 CEACAM8P31997 349 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 HMGN3Q15651 99 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 DHRS7BQ6IAN0 325 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 MMD2Q8IY49 270 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SUMF2Q8NBJ7 301 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 POC1AQ8NBT0 407 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 OR13D1Q8NGV5 346 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 TMPRSS13Q9BYE2 586 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 GAR1Q9NY12 217 aaKnown RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 A0A1B0GU03 582 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 GOSR1O95249 250 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 DEFA4P12838 97 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 IGFBP3P17936 291 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 HABP2Q14520 560 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 DPF1Q92782 380 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 NABP1Q96AH0 204 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 MOB3AQ96BX8 217 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 OR5B12Q96R08 314 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ARV1Q9H2C2 271 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 TREM2Q9NZC2 230 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 FLVCR2Q9UPI3 526 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 PHF3Q92576 2039 aaKnown RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 LTBP2Q14767 1821 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SHISA3A0PJX4 238 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 B8ZZF3 427 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 M0QZ24 198 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SLC25A17O43808 307 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 LPAR6P43657 344 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 GNG10P50151 68 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 EFNB2P52799 333 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 RAB4BP61018 213 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SLC35E4Q6ICL7 350 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM65Q6PI78 240 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 ZDHHC16Q969W1 377 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 STARD4Q96DR4 205 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 CNTNAP3Q9BZ76 1288 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SMIM3Q9BZL3 60 aa5.88□□□□□ -1.47
SF3B1-201ENST00000335508 SLC25A10Q9UBX3 287 aaPredicted RBP5.88□□□□□ -1.47
SF3B1-201ENST00000335508 C3orf85A0A1B0GTC6 90 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 K7N7A8 449 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 SYNGR1O43759 233 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CLDN14O95500 239 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 RAB4AP20338 218 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 OXLD1Q5BKU9 147 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 GVQW1Q8N7I0 195 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF649Q9BS31 505 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 INSIG2Q9Y5U4 225 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CEACAM4O75871 244 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CA7P43166 264 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 FAM74A1Q5RGS3 127 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 GGNBP1Q5YKI7 109 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 C11orf87Q6NUJ2 197 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CLEC18BQ6UXF7 455 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 DNM1P46Q6ZS02 220 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 LINC00469Q8N7U9 141 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF230Q9UIE0 474 aaPredicted RBP5.87□□□□□ -1.47
SF3B1-201ENST00000335508 PINLYPA6NC86 204 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 FCGR3BO75015 233 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CD37P11049 281 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 TMEM42Q69YG0 159 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 OR8G2PQ6IF36 304 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ETV3LQ6ZN32 361 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNF680Q8NEM1 530 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 OR1L6Q8NGR2 347 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ZNRF4Q8WWF5 429 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 NPAS1Q99742 590 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CACNG5Q9UF02 275 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 AK3Q9UIJ7 227 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 CSAG2Q9Y5P2 127 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 C9orf170A2RU37 121 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 NDUFS8O00217 210 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 OR2H2O95918 312 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 FBP1P09467 338 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 HIST1H3AP68431 136 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 HIST2H3PS2Q5TEC6 136 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 STUMQ69YW2 141 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 ALKAL2Q6UX46 152 aa5.87□□□□□ -1.47
SF3B1-201ENST00000335508 HIST2H3AQ71DI3 136 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms