RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SLC25A22Q9H936 323 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 SLC22A20A6NK97 555 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 C1QTNF9BB2RNN3 333 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 TRAPPC6AO75865 159 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 GUCA1AP43080 201 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 TNFRSF4P43489 277 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MEF2BQ02080 365 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MALLQ13021 153 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 PLPPR5Q32ZL2 321 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF468Q5VIY5 522 aaPredicted RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 PGPEP1LA6NFU8 196 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 KBTBD11O94819 623 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MSR1P21757 451 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 FBLP22087 321 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 DPPA3Q6W0C5 159 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 ZDHHC23Q8IYP9 409 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MRPL30Q8TCC3 161 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 EXTL1Q92935 676 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 SLC39A9Q9NUM3 307 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 IL36RNQ9UBH0 155 aa11.51□□□□□ -0.57
CCDC88C-201ENST00000331194 MYF5P13349 255 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 CD82P27701 267 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 CCKARP32238 428 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 CDKN1AP38936 164 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 HIST3H3Q16695 136 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 FAM69BQ5VUD6 431 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 TGIF2LYQ8IUE0 185 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 OR10G3Q8NGC4 313 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 MSL2Q9HCI7 577 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 A0A0U1RQK1 487 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF320A2RRD8 509 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 IL3RAP26951 378 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 C11orf42Q8N5U0 333 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF525Q8N782 197 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 ZNF845Q96IR2 970 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 OXGR1Q96P68 337 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 OR4C12Q96R67 309 aa11.5□□□□□ -0.57
CCDC88C-201ENST00000331194 CBY3A6NI87 242 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PDCD6O75340 191 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 GYPAP02724 150 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PSG2P11465 335 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 TCN2P20062 427 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 CTSSP25774 331 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 OR10J1P30954 320 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 CARD18P57730 90 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 EIF3IQ13347 325 aaKnown RBP11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 UCN2Q96RP3 112 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 P2RX4Q99571 388 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 FOXJ2Q9P0K8 574 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 TRAPPC1Q9Y5R8 145 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 UBE2L5PA0A1B0GUS4 154 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 SRPXP78539 464 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 KCNMB1Q16558 191 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 FBXW9Q5XUX1 488 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 TMPRSS7Q7RTY8 843 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 OR10V1Q8NGI7 309 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PIGCQ92535 297 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 NABP1Q96AH0 204 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 HIPK2Q9H2X6 1198 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PRDM6Q9NQX0 595 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 IGKV1-6A0A0C4DH72 117 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 KIAA1324LA8MWY0 1029 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 NRASP01111 189 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 UCP1P25874 307 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PMP22Q01453 160 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 DEFB133Q30KQ1 61 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 SPANXN5Q5MJ07 72 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 OR8G2PQ6IF36 304 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 Q6ZVH6 145 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 Q6ZWC4 215 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 OR2J1Q9GZK6 312 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 MANBALQ9NQG1 85 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 OBP2AQ9NY56 170 aa11.49□□□□□ -0.57
CCDC88C-201ENST00000331194 SHBQ15464 509 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 PRAMEF20Q5VT98 475 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 VN1R17PQ8TDU5 208 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 LMX1AQ8TE12 382 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 IMMP2LQ96T52 175 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 PSENENQ9NZ42 101 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 CACNG5Q9UF02 275 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 PGLYRP1O75594 196 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 NXPH2O95156 264 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 PDGFBP01127 241 aaPredicted RBP11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 CRYAAP02489 173 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 NPPCP23582 126 aa11.48□□□□□ -0.57
CCDC88C-201ENST00000331194 GABRG2P18507 467 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 ACOT6Q3I5F7 207 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 ACSM6Q6P461 480 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 CENPVQ7Z7K6 275 aaPredicted RBP11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 WDR5BQ86VZ2 330 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 Q8NFD4 153 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 UBALD1Q8TB05 177 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 ZCCHC14Q8WYQ9 949 aaKnown RBP11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 GAL3ST2Q9H3Q3 398 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 METTL7AQ9H8H3 244 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 HS3ST3A1Q9Y663 406 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 CLEC18AA5D8T8 446 aa11.47□□□□□ -0.57
CCDC88C-201ENST00000331194 PAGE4O60829 102 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms