RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TLN1Q9Y490 2541 aaKnown RBP1.86□□□□□ -2.11
HMGB1-201ENST00000326004 CDK5RAP2Q96SN8 1893 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 DOPEY2Q9Y3R5 2298 aa1.86□□□□□ -2.11
HMGB1-201ENST00000326004 BAZ2AQ9UIF9 1905 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 MED23Q9ULK4 1368 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 PTPRQQ9UMZ3 2332 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 PSME4Q14997 1843 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ECM29Q5VYK3 1845 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 A0A1B0GX12 115 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 FUOMA2VDF0 154 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ISPDA4D126 451 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SMIM23A6NLE4 172 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF850A8MQ14 1090 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 H0YJW9 148 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 H3BQV1 296 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TNFRSF11BO00300 401 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CCRL2O00421 344 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 PSPHP1O15172 72 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 COCHO43405 550 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 STX10O60499 249 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 GLSO94925 669 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 FAM107AO95990 144 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 IL4P05112 153 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 MMP7P09237 267 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ZNF806P0C7X5 589 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 NQO1P15559 274 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 IL1RNP18510 177 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 M6PRP20645 277 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CSRP1P21291 193 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SLCO1A2P46721 670 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 GFERP55789 205 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 GNG11P61952 73 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 PITPNAQ00169 270 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CDK5Q00535 292 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CD164Q04900 197 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CYP24A1Q07973 514 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 DMC1Q14565 340 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TRAM1Q15629 374 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ZNHIT3Q15649 155 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TOMM34Q15785 309 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 KCNJ8Q15842 424 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 EXOC3L4Q17RC7 722 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CDNFQ49AH0 187 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 C6orf99Q4VX62 202 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 LIN52Q52LA3 116 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 MPV17L2Q567V2 206 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TTC32Q5I0X7 151 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 OR10J3Q5JRS4 329 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CDKL4Q5MAI5 379 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 RBM48Q5RL73 367 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SYT6Q5T7P8 510 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 PTRHD1Q6GMV3 140 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SPOPLQ6IQ16 392 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ZFP1Q6P2D0 407 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SLC25A34Q6PIV7 304 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 FUNDC1Q8IVP5 155 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ZCCHC24Q8N2G6 241 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SPICQ8N5J4 248 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 UBA3Q8TBC4 463 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TEX47Q8TBZ9 253 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 RXFP4Q8TDU9 374 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 KCTD4Q8WVF5 259 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 DNAJC9Q8WXX5 260 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 RERGQ96A58 199 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 WDR34Q96EX3 536 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SMARCD1Q96GM5 515 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CEP19Q96LK0 163 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TBL1YQ9BQ87 522 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 RSG1Q9BU20 258 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 C9orf16Q9BUW7 83 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 NXF2Q9GZY0 626 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TOLLIPQ9H0E2 274 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ING2Q9H160 280 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 SLC38A10Q9HBR0 1119 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 EXOSC4Q9NPD3 245 aaKnown RBP1.85□□□□□ -2.11
HMGB1-201ENST00000326004 HEBP1Q9NRV9 189 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ARMC1Q9NVT9 282 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 C1orf109Q9NX04 203 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 IL37Q9NZH6 218 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ANXA10Q9UJ72 324 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 FBXL3Q9UKT7 428 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 CBY1Q9Y3M2 126 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 S4R3C0 116 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 COL4A1P02462 1669 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 ARAP2Q8WZ64 1704 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 TRIP11Q15643 1979 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 LOC285556D6RIA3 1793 aa1.85□□□□□ -2.11
HMGB1-201ENST00000326004 COL5A1P20908 1838 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-201ENST00000326004 FREM2Q5SZK8 3169 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 FRYLO94915 3013 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TRAV8-6A0A0B4J262 113 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CENPVL3A0A0U1RRI6 287 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 GMNCA6NCL1 334 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 CENPBD1B2RD01 187 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 KRBOX1C9JBD0 128 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 RPL36A-HNRNPH2H7BZ11 118 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 J3QLI3 93 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 MYL12BO14950 172 aa1.84□□□□□ -2.11
HMGB1-201ENST00000326004 TOX3O15405 576 aaPredicted RBP1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms