RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 C18orf12Q96KH6 178 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 OR14J1Q9UGF5 321 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 AKAP13Q12802 2813 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 DMXL2Q8TDJ6 3036 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 ZNF705GA8MUZ8 300 aaPredicted RBP13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 FUT6P51993 359 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 PRDX4Q13162 271 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 RNFT1Q5M7Z0 435 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 UBALD1Q8TB05 177 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 ZNF552Q9H707 407 aaPredicted RBP13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 DECR2Q9NUI1 292 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 SMG1Q96Q15 3661 aaKnown RBP13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 MED12LQ86YW9 2145 aa13.29□□□□□ -0.28
SHROOM1-201ENST00000319854 ZNF728P0DKX0 622 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 HLA-DRB3P79483 266 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 TNFRSF9Q07011 255 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 ARL6IP6Q8N6S5 226 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 CLDND2Q8NHS1 167 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 MSI2Q96DH6 328 aaKnown RBP13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 GTF3C1Q12789 2109 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 ZNF732B4DXR9 585 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 NXPH3O95157 252 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 IL13RA2Q14627 380 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 SPIN3Q5JUX0 258 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 TRAV39A0A0B4J263 110 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 HS3ST1O14792 307 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 SP1P08047 785 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 ZNF506Q5JVG8 444 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 Q6ZPA2 131 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 OR4X1Q8NH49 305 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 RCC1LQ96I51 464 aaKnown RBP13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 GPR87Q9BY21 358 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 NECAP2Q9NVZ3 263 aa13.28□□□□□ -0.28
SHROOM1-201ENST00000319854 SPAARA0A1B0GVQ0 90 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 SYNGR1O43759 233 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 HSPB1P04792 205 aaKnown RBP13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 CD55P08174 381 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 MMP9P14780 707 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 FGF7P21781 194 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 PCP4P48539 62 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 CCL11P51671 97 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 RPL23AP62750 156 aaKnown RBP13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 LIAT1Q6ZQX7 453 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 SLC35E3Q7Z769 313 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 ODF3L1Q8IXM7 274 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 OR2C3Q8N628 320 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 C10orf35Q96D05 121 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 SPOCK3Q9BQ16 436 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 SNHG12Q9BXW3 62 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 FGF23Q9GZV9 251 aaPredicted RBP13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 MAGT1Q9H0U3 335 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 GLRX2Q9NS18 164 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 CEP295Q9C0D2 2601 aa13.27□□□□□ -0.28
SHROOM1-201ENST00000319854 IFNL4K9M1U5 179 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 SLC10A1Q14973 349 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 PRR18Q8N4B5 295 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 RDH5Q92781 318 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 TMEM9BQ9NQ34 198 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 ZNF292O60281 2723 aa13.27□□□□□ -0.29
SHROOM1-201ENST00000319854 PROB1E7EW31 1015 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 NKX2-8O15522 239 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 RRP8O43159 456 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 CST7O76096 145 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 ZNF883P0CG24 379 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 SELEP16581 610 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 CD200P41217 278 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 C1orf87Q8N0U7 546 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 OR4D5Q8NGN0 318 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 C11orf1Q9H5F2 150 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 SLC2A9Q9NRM0 540 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 PITPNC1Q9UKF7 332 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 DVL1O14640 695 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 RBM11P57052 281 aaKnown RBP13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 FAM90A2PQ658T7 463 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 TMEM217Q8N7C4 229 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 SLC35G3Q8N808 338 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 NKX2-6A6NCS4 301 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 C21orf140B9A014 251 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 PHF1O43189 567 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 PDCD6O75340 191 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 RAB11AP62491 216 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 HOXA4Q00056 320 aaPredicted RBP13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 COL10A1Q03692 680 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 PLP2Q04941 152 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 OR8B8Q15620 311 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 TMEM183AQ8IXX5 376 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 EXTL1Q92935 676 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 TP53RKQ96S44 253 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 C1QTNF5Q9BXJ0 243 aa13.26□□□□□ -0.29
SHROOM1-201ENST00000319854 PCNX1Q96RV3 2341 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 ACACAQ13085 2346 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 TNFSF12O43508 249 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 AADACP22760 399 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 CA6P23280 308 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 ARL6IP1Q15041 203 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 WDR25Q64LD2 544 aaPredicted RBP13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 TMEM42Q69YG0 159 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 DEFB124Q8NES8 71 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 OR5C1Q8NGR4 320 aa13.25□□□□□ -0.29
SHROOM1-201ENST00000319854 RAB24Q969Q5 203 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms