RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 C8orf31Q8N9H6 132 aa12.97□□□□□ -0.33
LSM1-201ENST00000311351 RBMXL1Q96E39 390 aaKnown RBP12.97□□□□□ -0.33
LSM1-201ENST00000311351 NEDD4LQ96PU5 975 aa12.97□□□□□ -0.33
LSM1-201ENST00000311351 PLGRKTQ9HBL7 147 aa12.97□□□□□ -0.33
LSM1-201ENST00000311351 TAF9BQ9HBM6 251 aa12.97□□□□□ -0.33
LSM1-201ENST00000311351 MBNL3Q9NUK0 354 aaKnown RBP12.97□□□□□ -0.33
LSM1-201ENST00000311351 AK6Q9Y3D8 172 aaKnown RBP12.97□□□□□ -0.33
LSM1-201ENST00000311351 NOTCH3Q9UM47 2321 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 A0A1W2PRX2 142 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 M0QZK8 103 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 ARL6IP5O75915 188 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 BPNT1O95861 308 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 GAPDHP04406 335 aaKnown RBP12.96□□□□□ -0.33
LSM1-201ENST00000311351 PSMA1P25786 263 aaKnown RBP12.96□□□□□ -0.33
LSM1-201ENST00000311351 SSX1Q16384 188 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 SLC25A48Q6ZT89 311 aaKnown RBP12.96□□□□□ -0.33
LSM1-201ENST00000311351 MOB3BQ86TA1 216 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 NDUFA11Q86Y39 141 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 OR5AU1Q8NGC0 362 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 KCNG3Q8TAE7 436 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 ST6GALNAC6Q969X2 333 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 FAAP24Q9BTP7 215 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 TM2D1Q9BX74 207 aa12.96□□□□□ -0.33
LSM1-201ENST00000311351 PRKDCP78527 4128 aaKnown RBP12.95□□□□□ -0.34
LSM1-201ENST00000311351 SLC17A2O00624 439 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 DENRO43583 198 aaKnown RBP12.95□□□□□ -0.34
LSM1-201ENST00000311351 MRPS14O60783 128 aaKnown RBP12.95□□□□□ -0.34
LSM1-201ENST00000311351 IL3RAP26951 378 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 PPP1CCP36873 323 aaKnown RBP12.95□□□□□ -0.34
LSM1-201ENST00000311351 ZNF134P52741 427 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 CLDN12P56749 244 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 TMEM30BQ3MIR4 351 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 Q3ZCU0 254 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 CT45A1Q5HYN5 189 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 TCTEX1D4Q5JR98 221 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 Q6ZPA2 131 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 C5orf56Q8N8D9 126 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 OR52L2PQ8NGH6 319 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 CT45A3Q8NHU0 189 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 RTN4IP1Q8WWV3 396 aaPredicted RBP12.95□□□□□ -0.34
LSM1-201ENST00000311351 LPAR5Q9H1C0 372 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 RAB9BQ9NP90 201 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 ACOT13Q9NPJ3 140 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 KCNIP1Q9NZI2 227 aa12.95□□□□□ -0.34
LSM1-201ENST00000311351 SOCS1O15524 211 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 OPN1MWP04001 364 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 OPN1MW2P0DN77 364 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 OPN1MW3P0DN78 364 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 BLVRBP30043 206 aaPredicted RBP12.94□□□□□ -0.34
LSM1-201ENST00000311351 GABARAPL2P60520 117 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 RAB11BQ15907 218 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 CENPVQ7Z7K6 275 aaPredicted RBP12.94□□□□□ -0.34
LSM1-201ENST00000311351 IZUMO1Q8IYV9 350 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 R3HDM4Q96D70 268 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 EAF1Q96JC9 268 aaPredicted RBP12.94□□□□□ -0.34
LSM1-201ENST00000311351 YTHDF1Q9BYJ9 559 aaKnown RBP12.94□□□□□ -0.34
LSM1-201ENST00000311351 OR2S2Q9NQN1 319 aa12.94□□□□□ -0.34
LSM1-201ENST00000311351 ZNF736B4DX44 427 aaPredicted RBP12.93□□□□□ -0.34
LSM1-201ENST00000311351 ARSBP15848 533 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 ZNF137PP52743 207 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 CD83Q01151 205 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 EMX1Q04741 257 aaPredicted RBP12.93□□□□□ -0.34
LSM1-201ENST00000311351 HMGN3Q15651 99 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 HES5Q5TA89 166 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 OR2W3Q7Z3T1 314 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 TGIF2LXQ8IUE1 241 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 SVOPQ8N4V2 548 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 OR51D1Q8NGF3 324 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 HDHD3Q9BSH5 251 aaPredicted RBP12.93□□□□□ -0.34
LSM1-201ENST00000311351 CHMP1AQ9HD42 196 aaPredicted RBP12.93□□□□□ -0.34
LSM1-201ENST00000311351 NDUFB11Q9NX14 153 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 JPT1Q9UK76 154 aa12.93□□□□□ -0.34
LSM1-201ENST00000311351 SHISA3A0PJX4 238 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 FOXI3A8MTJ6 420 aaPredicted RBP12.92□□□□□ -0.34
LSM1-201ENST00000311351 G3V4G9 280 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 FGF16O43320 207 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 RRP9O43818 475 aaKnown RBP12.92□□□□□ -0.34
LSM1-201ENST00000311351 NAPSAO96009 420 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 OR10A3P58181 314 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 PLA2G7Q13093 441 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 EBI3Q14213 229 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 MORN2Q502X0 79 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 ZNF554Q86TJ5 538 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 Q8N6K4 173 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 SETD6Q8TBK2 473 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 NOL4LQ96MY1 436 aaPredicted RBP12.92□□□□□ -0.34
LSM1-201ENST00000311351 ABHD14AQ9BUJ0 271 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 AK3Q9UIJ7 227 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 LINC00527Q9UJ94 153 aa12.92□□□□□ -0.34
LSM1-201ENST00000311351 TGP01266 2768 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 PDLIM3Q53GG5 364 aaPredicted RBP12.91□□□□□ -0.34
LSM1-201ENST00000311351 KHDC1LQ5JSQ8 128 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 ZNF880Q6PDB4 577 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 OR4F17Q8NGA8 305 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 OR4X2Q8NGF9 303 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 OR2T10Q8NGZ9 312 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 IL1F10Q8WWZ1 152 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 FAM3DQ96BQ1 224 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 OR4F4Q96R69 305 aa12.91□□□□□ -0.34
LSM1-201ENST00000311351 URM1Q9BTM9 101 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms