RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 ZDHHC8Q9ULC8 765 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CKAP5Q14008 2032 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 SCTP09683 121 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 HIST1H1BP16401 226 aaKnown RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 PAFAH1B2P68402 229 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 UBE2V2Q15819 145 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 SLC25A53Q5H9E4 307 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 GMPPAQ96IJ6 420 aaPredicted RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 HIST1H4GQ99525 98 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 VAX2Q9UIW0 290 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CDX4O14627 284 aaPredicted RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 MFAP2P55001 183 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 SMAD4Q13485 552 aaKnown RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 PQLC2Q6ZP29 291 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 WFDC6Q9BQY6 131 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 PHF7Q9BWX1 381 aaPredicted RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 ANXA10Q9UJ72 324 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 UBE2L6O14933 153 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 PPYP01298 95 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 SPRED2Q7Z698 418 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 PTP4A1Q93096 173 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 SSBP3Q9BWW4 388 aaPredicted RBP11.04□□□□□ -0.64
USP38-201ENST00000307017 A0A1W2PN81 502 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 PEX11BO96011 259 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CRHP06850 196 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CCL8P80075 99 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 Q5BKY6 102 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 RHBDD2Q6NTF9 364 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CADM4Q8NFZ8 388 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 CHODLQ9H9P2 273 aa11.04□□□□□ -0.64
USP38-201ENST00000307017 PRRX1P54821 245 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 RBM38Q9H0Z9 239 aaKnown RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 PARLQ9H300 379 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 MANBALQ9NQG1 85 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 TRBV5-4A0A0C4DH59 114 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 SPTY2D1-AS1A0A0U1RR47 76 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 LOC101059948A0A1B0GTJ6 334 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 GAGE10A6NGK3 116 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 MKRN2OSH3BPM6 223 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 K7EQS6 105 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 CFDP00746 253 aaPredicted RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 GPR6P46095 362 aaPredicted RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 NANOS3P60323 173 aaKnown RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 ZNF770Q6IQ21 691 aaPredicted RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 TMEM52Q8NDY8 209 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 IP6K3Q96PC2 410 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 CD99P14209 185 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 OR13G1Q8NGZ3 307 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 ANAPC16Q96DE5 110 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 SPAG8Q99932 426 aaPredicted RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 INSIG2Q9Y5U4 225 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 TSPAN13O95857 204 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 GPR3P46089 330 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 MRPL30Q8TCC3 161 aaKnown RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 BIVMQ86UB2 503 aa11.03□□□□□ -0.64
USP38-201ENST00000307017 SNRNP40Q96DI7 357 aaKnown RBP11.03□□□□□ -0.64
USP38-201ENST00000307017 ROM1Q03395 351 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 DOLPP1Q86YN1 238 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 MAFAQ8NHW3 353 aaPredicted RBP11.02□□□□□ -0.64
USP38-201ENST00000307017 ASB5Q8WWX0 329 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 C14orf144Q96I85 54 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 CCL13Q99616 98 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 ZNF426Q9BUY5 554 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 KCNK7Q9Y2U2 307 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 PSMB11A5LHX3 300 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 MFSD2BA6NFX1 497 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 IGFBP7Q16270 282 aa11.02□□□□□ -0.64
USP38-201ENST00000307017 OOEPA6NGQ2 149 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 CLDN14O95500 239 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 PRSS2P07478 247 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 P2RY1P47900 373 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 KLF9Q13886 244 aaPredicted RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 JMJD6Q6NYC1 403 aaPredicted RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 STXBP6Q8NFX7 210 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 SPSB1Q96BD6 273 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 RECKO95980 971 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 ZNF385AQ96PM9 386 aaKnown RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 OPN3Q9H1Y3 402 aaPredicted RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 SLC52A3Q9NQ40 469 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 SCN9AQ15858 1988 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 ARHGEF17Q96PE2 2063 aaPredicted RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 CYB5R3P00387 301 aaPredicted RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 CRYABP02511 175 aaKnown RBP11.02□□□□□ -0.65
USP38-201ENST00000307017 TNFRSF1AP19438 455 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 LOXL3P58215 753 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 HERVK_113P61574 105 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 HERPUD1Q15011 391 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 C1QTNF12Q5T7M4 302 aa11.02□□□□□ -0.65
USP38-201ENST00000307017 SMAD7O15105 426 aaKnown RBP11.01□□□□□ -0.65
USP38-201ENST00000307017 KLF4O43474 513 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 RIGQ13278 110 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 DOCK2Q92608 1830 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 PRR35P0CG20 571 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 CXorf66Q5JRM2 361 aaPredicted RBP11.01□□□□□ -0.65
USP38-201ENST00000307017 ZNF441Q8N8Z8 693 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 WFDC12Q8WWY7 111 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 PIPOXQ9P0Z9 390 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 A6NDN8 102 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 MDP1Q86V88 176 aa11.01□□□□□ -0.65
USP38-201ENST00000307017 PRSS27Q9BQR3 290 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms