RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IFNL4K9M1U5 179 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 TNFRSF1AP19438 455 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 GALMQ96C23 342 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 A0A1W2PPR1 153 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 B8ZZF3 427 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 NXPH3O95157 252 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 CFHR2P36980 270 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 KCNJ3P48549 501 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 OR2B11Q5JQS5 317 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 SLC35E4Q6ICL7 350 aa13.74□□□□□ -0.21
USP4-201ENST00000265560 ITLN2Q8WWU7 325 aaPredicted RBP13.74□□□□□ -0.21
USP4-201ENST00000265560 A0A1W2PPE3 182 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 TMEM187Q14656 261 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 GALNT11Q8NCW6 608 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 COMMD9Q9P000 198 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 UBE2J1Q9Y385 318 aaPredicted RBP13.73□□□□□ -0.21
USP4-201ENST00000265560 C3orf85A0A1B0GTC6 90 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 ODAMA1E959 279 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 H7C1Q1 480 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 SCGB1D2O95969 90 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 HEXAP06865 529 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 CTXN2P0C2S0 81 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 S100A10P60903 97 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 HMGN3Q15651 99 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 SRSF7Q16629 238 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP4-201ENST00000265560 IZUMO4Q1ZYL8 232 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 SHEQ5VZ18 495 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 GGNBP1Q5YKI7 109 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 ABHD14BQ96IU4 210 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 MBD2Q9UBB5 411 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 TANC2Q9HCD6 1990 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 K7N7A8 449 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 ECI1P42126 302 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 IAH1Q2TAA2 248 aaPredicted RBP13.73□□□□□ -0.21
USP4-201ENST00000265560 LYPD2Q6UXB3 125 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 BTNL3Q6UXE8 466 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 ZNF546Q86UE3 836 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 OR8H1Q8NGG4 311 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 LRRC46Q96FV0 321 aa13.73□□□□□ -0.21
USP4-201ENST00000265560 PAIP2BQ9ULR5 123 aaKnown RBP13.73□□□□□ -0.21
USP4-201ENST00000265560 OOEPA6NGQ2 149 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 L7N2F9 121 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 GPR31O00270 319 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 MPC2O95563 127 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 IGLV2-14P01704 120 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 NDUFB7P17568 137 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 TMEM268Q5VZI3 342 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 GAFA1Q96PS6 74 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 CABLES2Q9BTV7 478 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 EGLN1Q9GZT9 426 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 UCP3P55916 312 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 RAB32Q13637 225 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 STUMQ69YW2 141 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 SNX22Q96L94 193 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 ARL6Q9H0F7 186 aa13.72□□□□□ -0.21
USP4-201ENST00000265560 H0YIZ8 118 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 ST8SIA5O15466 376 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 PGLYRP1O75594 196 aaPredicted RBP13.71□□□□□ -0.21
USP4-201ENST00000265560 RGS11O94810 467 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 COL8A2P25067 703 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 LUMP51884 338 aaPredicted RBP13.71□□□□□ -0.21
USP4-201ENST00000265560 ZNF672Q499Z4 452 aaPredicted RBP13.71□□□□□ -0.21
USP4-201ENST00000265560 SLC35G3Q8N808 338 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 MSI2Q96DH6 328 aaKnown RBP13.71□□□□□ -0.21
USP4-201ENST00000265560 TMEM106BQ9NUM4 274 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 CELSR1Q9NYQ6 3014 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 FCN3O75636 299 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 CLDN14O95500 239 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 CFDP00746 253 aaPredicted RBP13.71□□□□□ -0.21
USP4-201ENST00000265560 C4orf17Q53FE4 359 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 MOB1BQ7L9L4 216 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 MFFQ9GZY8 342 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 OR2D2Q9H210 308 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 MS4A5Q9H3V2 200 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 RAB18Q9NP72 206 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 OR5AC2Q9NZP5 309 aa13.71□□□□□ -0.21
USP4-201ENST00000265560 LRRC30A6NM36 301 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 MGST3O14880 152 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 LOXP28300 417 aaPredicted RBP13.7□□□□□ -0.22
USP4-201ENST00000265560 CMTM1Q8IZ96 169 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 DHRS9Q9BPW9 319 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 ABCA12Q86UK0 2595 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 TMEM178BH3BS89 294 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 ATP6V1G1O75348 118 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 SOD3P08294 240 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 RNF224P0DH78 156 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 LIAT1Q6ZQX7 453 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 NINJ1Q92982 152 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 GNG12Q9UBI6 72 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 PSG11Q9UQ72 335 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 B9A039 149 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 CD8AP01732 235 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 HLA-GP17693 338 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 NFYBP25208 207 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 PRB3Q04118 309 aaPredicted RBP13.7□□□□□ -0.22
USP4-201ENST00000265560 C1QTNF12Q5T7M4 302 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 C11orf87Q6NUJ2 197 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 SSX8Q7RTT4 187 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 CCDC71LQ8N9Z2 235 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 OR52M1Q8NGK5 317 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms