RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CXCL1P09341 107 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 ARG2P78540 354 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 STRAPQ9Y3F4 350 aaKnown RBP18.09■□□□□ 0.49
TRIM28-201ENST00000253024 OR2W1Q9Y3N9 320 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 PITX3O75364 302 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 NXPH2O95156 264 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 S100A9P06702 114 aaKnown RBP18.09■□□□□ 0.49
TRIM28-201ENST00000253024 TAAR9Q96RI9 348 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 TINAGQ9UJW2 476 aa18.09■□□□□ 0.49
TRIM28-201ENST00000253024 RBMXL2O75526 392 aaKnown RBP18.08■□□□□ 0.49
TRIM28-201ENST00000253024 UCP1P25874 307 aa18.08■□□□□ 0.49
TRIM28-201ENST00000253024 CEACAM6P40199 344 aa18.08■□□□□ 0.49
TRIM28-201ENST00000253024 DEFB123Q8N688 67 aa18.08■□□□□ 0.49
TRIM28-201ENST00000253024 CNEP1R1Q8N9A8 125 aa18.08■□□□□ 0.49
TRIM28-201ENST00000253024 C5orf52A6NGY3 159 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 B4E171 279 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 YKT6O15498 198 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 OR2H2O95918 312 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 TSPAN7P41732 249 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 STX12Q86Y82 276 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 ZNF295-AS1Q8N0V1 137 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 FAM234AQ9H0X4 552 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 RPRMQ9NS64 109 aa18.08■□□□□ 0.48
TRIM28-201ENST00000253024 TNFSF15O95150 251 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 IGHEP01854 428 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 CYC1P08574 325 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 OR8U8P0C7N1 319 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 GNG3P63215 75 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 ID3Q02535 119 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 LILRB2Q8N423 598 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 ZNF561Q8N587 486 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 OR5T1Q8NG75 326 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 RAMP3O60896 148 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 KIAA0141Q14154 515 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-201ENST00000253024 ICAM4Q14773 271 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 ZNF324BQ6AW86 544 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-201ENST00000253024 CDPF1Q6NVV7 123 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 WDYHV1Q96HA8 205 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 C11orf1Q9H5F2 150 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 RNF122Q9H9V4 155 aa18.07■□□□□ 0.48
TRIM28-201ENST00000253024 MMP9P14780 707 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 OR10V1Q8NGI7 309 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 OR5A2Q8NGI9 324 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 UBE2L5PA0A1B0GUS4 154 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 CLN5O75503 358 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 ERVFRD-1P60508 538 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 NECAP1Q8NC96 275 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 PLSCR2Q9NRY7 297 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 PSENENQ9NZ42 101 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 TPRP12270 2363 aaKnown RBP18.06■□□□□ 0.48
TRIM28-201ENST00000253024 TRAV20A0A0B4J274 112 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 SCAF4O95104 1147 aaKnown RBP18.06■□□□□ 0.48
TRIM28-201ENST00000253024 SRP19P09132 144 aaKnown RBP18.06■□□□□ 0.48
TRIM28-201ENST00000253024 SRPXP78539 464 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 HLA-DRB3P79483 266 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 GFI1BQ5VTD9 330 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 SCCPDHQ8NBX0 429 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 Q8WTZ3 238 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 TMPRSS5Q9H3S3 457 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 RNF115Q9Y4L5 304 aa18.06■□□□□ 0.48
TRIM28-201ENST00000253024 PRSS44E7EML9 344 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 CYB5BO43169 146 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 SOX15O60248 233 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 IGKV1-5P01602 117 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 PMELP40967 661 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 AESQ08117 197 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 TESK1Q15569 626 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 OR1L1Q8NH94 360 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 OBP2BQ9NPH6 170 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 CLDN1O95832 211 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 IFNA5P01569 189 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 G6PCP35575 357 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 TMEM164Q5U3C3 297 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 ZNF573Q86YE8 665 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 ATP5SQ99766 215 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 DCTN5Q9BTE1 182 aa18.05■□□□□ 0.48
TRIM28-201ENST00000253024 COL8A2P25067 703 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 RAB5CP51148 216 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 SLC10A1Q14973 349 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 OR52L2PQ8NGH6 319 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 TMEM45BQ96B21 275 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 SSX3Q99909 188 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 PRO3102Q9H379 93 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 MSL2Q9HCI7 577 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 SPRR3Q9UBC9 169 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 PTPRZ1P23471 2315 aaPredicted RBP18.04■□□□□ 0.48
TRIM28-201ENST00000253024 IGKV3D-15A0A087WSY6 115 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 AGAP20933 346 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 HMGN3Q15651 99 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 FAM185AQ8N0U4 392 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 SCGB1C1Q8TD33 95 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 IFT22Q9H7X7 185 aa18.04■□□□□ 0.48
TRIM28-201ENST00000253024 H0Y980 276 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 ACP1P24666 158 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 OR3A1P47881 315 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 ZNF880Q6PDB4 577 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 ABI3Q9P2A4 366 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 PSPNO60542 156 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 IGLV2-14P01704 120 aa18.03■□□□□ 0.48
TRIM28-201ENST00000253024 FABP6P51161 128 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms