RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 A0A1W2PR64 198 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 A0A1W2PRV1 198 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 ARGFXA6NJG6 315 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 KIAA1324LA8MWY0 1029 aaPredicted RBP13.93□□□□□ -0.18
HOXD3-201ENST00000249440 J3QW42 95 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 MT-CO3P00414 261 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 CD46P15529 392 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 ADAM5Q6NVV9 412 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 TRAPPC2LQ9UL33 140 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 POLDIP2Q9Y2S7 368 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 CNOT1A5YKK6 2376 aaKnown RBP13.93□□□□□ -0.18
HOXD3-201ENST00000249440 C3orf80F5H4A9 247 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 H3BP45 60 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 HSPB1P04792 205 aaKnown RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 S100A8P05109 93 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 SRP19P09132 144 aaKnown RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 MRPL49Q13405 166 aaKnown RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 PRR18Q8N4B5 295 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 IL17BQ9UHF5 180 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 RBM7Q9Y580 266 aaKnown RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 H3BQ15 152 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 SCAF4O95104 1147 aaKnown RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 OR2C1O95371 312 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 IGLV2-14P01704 120 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 MAS1LP35410 378 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 S100A12P80511 92 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 TESK1Q15569 626 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 ZNF506Q5JVG8 444 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 ZNF497Q6ZNH5 498 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 P4HA3Q7Z4N8 544 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.92□□□□□ -0.18
HOXD3-201ENST00000249440 THNSL2Q86YJ6 484 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 DEFB127Q9H1M4 99 aa13.92□□□□□ -0.18
HOXD3-201ENST00000249440 PCNX2A6NKB5 2137 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 SIRPB1O00241 398 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 SYNGR2O43760 224 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 OR2H2O95918 312 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 ACAA1P09110 424 aaPredicted RBP13.91□□□□□ -0.18
HOXD3-201ENST00000249440 RPS23P62266 143 aaKnown RBP13.91□□□□□ -0.18
HOXD3-201ENST00000249440 Q6ZRM9 215 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 SCCPDHQ8NBX0 429 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 WDYHV1Q96HA8 205 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 LIN7CQ9NUP9 197 aaKnown RBP13.91□□□□□ -0.18
HOXD3-201ENST00000249440 CACNG5Q9UF02 275 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 LOC400499M0QZD8 3231 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 CD200P41217 278 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 CEBPGP53567 150 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 ICAM4Q14773 271 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 ZNF295-AS1Q8N0V1 137 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 CLDND2Q8NHS1 167 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 METTL1Q9UBP6 276 aaKnown RBP13.91□□□□□ -0.18
HOXD3-201ENST00000249440 PPP1R3CQ9UQK1 317 aa13.91□□□□□ -0.18
HOXD3-201ENST00000249440 TRGV5A0A0B4J1U4 118 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 IGKV1-39P01597 117 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 IGKV1D-39P04432 117 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 S100A9P06702 114 aaKnown RBP13.9□□□□□ -0.18
HOXD3-201ENST00000249440 CD59P13987 128 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 ERVK11-1P61568 191 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 TMEM267Q0VDI3 215 aaPredicted RBP13.9□□□□□ -0.18
HOXD3-201ENST00000249440 IZUMO4Q1ZYL8 232 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 KHDC3LQ587J8 217 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 SCGB1C1Q8TD33 95 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 CEP250Q9BV73 2442 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 PTPRZ1P23471 2315 aaPredicted RBP13.9□□□□□ -0.18
HOXD3-201ENST00000249440 TRAV1-1A0A0B4J248 108 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 TRAV39A0A0B4J263 110 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 A0A1W2PR80 420 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 OR2B8PP59922 312 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 FABP9Q0Z7S8 132 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 IGFBP7Q16270 282 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 WDR86Q86TI4 376 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 VASH2Q86V25 355 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 ZNF429Q86V71 674 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 RAB39BQ96DA2 213 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 KCNS2Q9ULS6 477 aa13.9□□□□□ -0.18
HOXD3-201ENST00000249440 A0A087WWC5 75 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 A0A1W2PPE3 182 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 SH2D1BO14796 132 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 SMPD2O60906 423 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 IFNA17P01571 189 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 SMIM6P0DI80 62 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 CBR1P16152 277 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 TAGLN2P37802 199 aaKnown RBP13.89□□□□□ -0.19
HOXD3-201ENST00000249440 UBE2KP61086 200 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 PPP1CBP62140 327 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF146Q15072 292 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 C1QL4Q86Z23 238 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 CYB561D1Q8N8Q1 229 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 NIPSNAP3BQ9BS92 247 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 OR2J1Q9GZK6 312 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 MBNL3Q9NUK0 354 aaKnown RBP13.89□□□□□ -0.19
HOXD3-201ENST00000249440 PSENENQ9NZ42 101 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 RNF150Q9ULK6 438 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 WDR1O75083 606 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 NXPH2O95156 264 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 ZNF16P17020 682 aaPredicted RBP13.89□□□□□ -0.19
HOXD3-201ENST00000249440 CEACAM6P40199 344 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 HBG1P69891 147 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 HBG2P69892 147 aa13.89□□□□□ -0.19
HOXD3-201ENST00000249440 TGFBR3Q03167 851 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms