RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TRBV24-1A0A075B6N3 115 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 LRRC3CA6NJW4 275 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 DFFBO76075 338 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 EPHA8P29322 1005 aaPredicted RBP10.54□□□□□ -0.72
NUP88-201ENST00000225696 CD81P60033 236 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 P2RY6Q15077 328 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 OR8G1Q15617 311 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 ABLIM2Q6H8Q1 611 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 AGBL5Q8NDL9 886 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 GATAD1Q8WUU5 269 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 MBD3L1Q8WWY6 194 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 ELOVL1Q9BW60 279 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 PLK3Q9H4B4 646 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 WDR54Q9H977 334 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 TMEM242Q9NWH2 141 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 PPP1R3CQ9UQK1 317 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 OR2W1Q9Y3N9 320 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 MED12LQ86YW9 2145 aa10.54□□□□□ -0.72
NUP88-201ENST00000225696 C9J4A7 227 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 IFNL4K9M1U5 179 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 SYNGR2O43760 224 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 AMBPP02760 352 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 SNRPCP09234 159 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 GZMBP10144 247 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 MDH2P40926 338 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 PKIAP61925 76 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 ARF1P84077 181 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 Q0VFX4 171 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 ADIRFQ15847 76 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 REC114Q7Z4M0 266 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 ZDHHC23Q8IYP9 409 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 RPP25LQ8N5L8 163 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 RNASE11Q8TAA1 199 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 OR4C12Q96R67 309 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 PRDM14Q9GZV8 571 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 PSENENQ9NZ42 101 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 KIR2DS1A0A191URI9 304 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 CNOT4O95628 575 aaKnown RBP10.53□□□□□ -0.72
NUP88-201ENST00000225696 DEFA4P12838 97 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 APLNRP35414 380 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 KIR2DS4P43632 304 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 PCBD1P61457 104 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 ERVS71-1P61550 626 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 KIR2DS1Q14954 304 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 SRSF7Q16629 238 aaKnown RBP eCLIP10.53□□□□□ -0.72
NUP88-201ENST00000225696 CEACAM21Q3KPI0 293 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 ZNF585BQ52M93 769 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 C16orf82Q7Z2V1 217 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 OR10J5Q8NHC4 309 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 SCGB1C1Q8TD33 95 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 SAP25Q8TEE9 199 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 HLA-CQ95604 372 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 IL22RA2Q969J5 263 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 CLDN23Q96B33 292 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 MISP3Q96FF7 219 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 RAB40CQ96S21 281 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 OR51B6Q9H340 312 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 PLA2G3Q9NZ20 509 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 GAB2Q9UQC2 676 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 USF3Q68DE3 2245 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 GTF3C1Q12789 2109 aa10.53□□□□□ -0.72
NUP88-201ENST00000225696 DNAJC13O75165 2243 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 SPENQ96T58 3664 aaKnown RBP10.52□□□□□ -0.72
NUP88-201ENST00000225696 SMCO3A2RU48 225 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 MAP1LC3B2A6NCE7 125 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A10PA6NDY2 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A18PA6NE21 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A16PA6NEW6 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A20PA6NIJ5 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A8PA6NJQ4 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A7PA6NKC0 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 GJE1A6NN92 205 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A22PA8MWA6 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A12PA8MX19 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A5PA8MXJ8 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A23PA8MXZ1 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 TRAPPC2LH3BP13 241 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 RHBDL1O75783 438 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 PFN1P07737 140 aaKnown RBP10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A15PP0C7V4 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A13PP0C7W8 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A14PP0C7W9 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FAM90A24PP0C7X0 464 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 FGF5P12034 268 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 ZNF16P17020 682 aaPredicted RBP10.52□□□□□ -0.72
NUP88-201ENST00000225696 TUBG1P23258 451 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 SRD5A2P31213 254 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 PNRC1Q12796 327 aaPredicted RBP10.52□□□□□ -0.72
NUP88-201ENST00000225696 TESK1Q15569 626 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 LRRC75BQ2VPJ9 315 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 SPANXN5Q5MJ07 72 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 RIPPLY2Q5TAB7 128 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 OR10A7Q8NGE5 316 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 RPUSD4Q96CM3 377 aaKnown RBP10.52□□□□□ -0.72
NUP88-201ENST00000225696 GPR87Q9BY21 358 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 MAP1LC3BQ9GZQ8 125 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 VAX2Q9UIW0 290 aa10.52□□□□□ -0.72
NUP88-201ENST00000225696 LOC400499M0QZD8 3231 aa10.52□□□□□ -0.73
NUP88-201ENST00000225696 CACNA1DQ01668 2161 aa10.52□□□□□ -0.73
NUP88-201ENST00000225696 ZNF737O75373 536 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms