RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 NEUROG1Q92886 237 aa8.83□□□□□ -1
CLN3-248ENST00000636355 HYLS1Q96M11 299 aa8.83□□□□□ -1
CLN3-248ENST00000636355 GAFA1Q96PS6 74 aa8.83□□□□□ -1
CLN3-248ENST00000636355 RTBDNQ9BSG5 229 aaPredicted RBP8.83□□□□□ -1
CLN3-248ENST00000636355 BEX2Q9BXY8 128 aa8.83□□□□□ -1
CLN3-248ENST00000636355 LIME1Q9H400 295 aa8.83□□□□□ -1
CLN3-248ENST00000636355 RANBP3Q9H6Z4 567 aaPredicted RBP8.83□□□□□ -1
CLN3-248ENST00000636355 BEX1Q9HBH7 125 aa8.83□□□□□ -1
CLN3-248ENST00000636355 RAB18Q9NP72 206 aa8.83□□□□□ -1
CLN3-248ENST00000636355 SLC2A9Q9NRM0 540 aa8.83□□□□□ -1
CLN3-248ENST00000636355 MGAT4CQ9UBM8 478 aa8.83□□□□□ -1
CLN3-248ENST00000636355 JPT1Q9UK76 154 aa8.83□□□□□ -1
CLN3-248ENST00000636355 PPIAL4AQ9Y536 164 aa8.83□□□□□ -1
CLN3-248ENST00000636355 IGKV1-6A0A0C4DH72 117 aa8.82□□□□□ -1
CLN3-248ENST00000636355 A6NNC1 897 aa8.82□□□□□ -1
CLN3-248ENST00000636355 C12orf77C9JDV5 145 aa8.82□□□□□ -1
CLN3-248ENST00000636355 GPR31O00270 319 aa8.82□□□□□ -1
CLN3-248ENST00000636355 ITGB1BP1O14713 200 aa8.82□□□□□ -1
CLN3-248ENST00000636355 BET1O15155 118 aa8.82□□□□□ -1
CLN3-248ENST00000636355 CYB5R3P00387 301 aaPredicted RBP8.82□□□□□ -1
CLN3-248ENST00000636355 HEXAP06865 529 aa8.82□□□□□ -1
CLN3-248ENST00000636355 DANCRP0C864 163 aa8.82□□□□□ -1
CLN3-248ENST00000636355 AKR1C4P17516 323 aa8.82□□□□□ -1
CLN3-248ENST00000636355 PIGPP57054 158 aa8.82□□□□□ -1
CLN3-248ENST00000636355 CYCSP99999 105 aaKnown RBP8.82□□□□□ -1
CLN3-248ENST00000636355 MEF2CQ06413 473 aaPredicted RBP8.82□□□□□ -1
CLN3-248ENST00000636355 LY6G6FQ5SQ64 297 aa8.82□□□□□ -1
CLN3-248ENST00000636355 LDLRAD3Q86YD5 345 aa8.82□□□□□ -1
CLN3-248ENST00000636355 LRTM2Q8N967 370 aa8.82□□□□□ -1
CLN3-248ENST00000636355 ZNF565Q8N9K5 539 aa8.82□□□□□ -1
CLN3-248ENST00000636355 ZBTB34Q8NCN2 500 aa8.82□□□□□ -1
CLN3-248ENST00000636355 OR52B4Q8NGK2 314 aa8.82□□□□□ -1
CLN3-248ENST00000636355 NINJ1Q92982 152 aa8.82□□□□□ -1
CLN3-248ENST00000636355 TOMM40LQ969M1 308 aa8.82□□□□□ -1
CLN3-248ENST00000636355 AKR1E2Q96JD6 320 aa8.82□□□□□ -1
CLN3-248ENST00000636355 SPOCK3Q9BQ16 436 aa8.82□□□□□ -1
CLN3-248ENST00000636355 NAA60Q9H7X0 242 aa8.82□□□□□ -1
CLN3-248ENST00000636355 LINC00574Q9H8X3 128 aa8.82□□□□□ -1
CLN3-248ENST00000636355 KCNIP3Q9Y2W7 256 aa8.82□□□□□ -1
CLN3-248ENST00000636355 USP9XQ93008 2570 aaPredicted RBP8.82□□□□□ -1
CLN3-248ENST00000636355 UBR5O95071 2799 aaPredicted RBP8.82□□□□□ -1
CLN3-248ENST00000636355 KIAA2026Q5HYC2 2103 aa8.81□□□□□ -1
CLN3-248ENST00000636355 TRGV10A0A0A0MS01 117 aa8.81□□□□□ -1
CLN3-248ENST00000636355 DUXBA0A1W2PPF3 345 aa8.81□□□□□ -1
CLN3-248ENST00000636355 C3orf80F5H4A9 247 aa8.81□□□□□ -1
CLN3-248ENST00000636355 F2RL2O00254 374 aa8.81□□□□□ -1
CLN3-248ENST00000636355 GPR37O15354 613 aa8.81□□□□□ -1
CLN3-248ENST00000636355 HSPA12AO43301 675 aa8.81□□□□□ -1
CLN3-248ENST00000636355 CD8AP01732 235 aa8.81□□□□□ -1
CLN3-248ENST00000636355 HBZP02008 142 aa8.81□□□□□ -1
CLN3-248ENST00000636355 CXCL3P19876 107 aa8.81□□□□□ -1
CLN3-248ENST00000636355 IL2RGP31785 369 aa8.81□□□□□ -1
CLN3-248ENST00000636355 RBMXP38159 391 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 GZMKP49863 264 aa8.81□□□□□ -1
CLN3-248ENST00000636355 LUMP51884 338 aaPredicted RBP8.81□□□□□ -1
CLN3-248ENST00000636355 FXYD4P59646 89 aa8.81□□□□□ -1
CLN3-248ENST00000636355 SUPT4H1P63272 117 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 AESQ08117 197 aa8.81□□□□□ -1
CLN3-248ENST00000636355 CD300CQ08708 224 aa8.81□□□□□ -1
CLN3-248ENST00000636355 FGL1Q08830 312 aa8.81□□□□□ -1
CLN3-248ENST00000636355 BAMBIQ13145 260 aa8.81□□□□□ -1
CLN3-248ENST00000636355 SNTB1Q13884 538 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 CLEC18BQ6UXF7 455 aa8.81□□□□□ -1
CLN3-248ENST00000636355 NOXA1Q86UR1 476 aa8.81□□□□□ -1
CLN3-248ENST00000636355 BOLLQ8N9W6 283 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 DRAXINQ8NBI3 349 aaPredicted RBP8.81□□□□□ -1
CLN3-248ENST00000636355 ADAD2Q8NCV1 583 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 BVESQ8NE79 360 aa8.81□□□□□ -1
CLN3-248ENST00000636355 OR10A7Q8NGE5 316 aa8.81□□□□□ -1
CLN3-248ENST00000636355 OR10V1Q8NGI7 309 aa8.81□□□□□ -1
CLN3-248ENST00000636355 RTN4IP1Q8WWV3 396 aaPredicted RBP8.81□□□□□ -1
CLN3-248ENST00000636355 EDARADDQ8WWZ3 215 aa8.81□□□□□ -1
CLN3-248ENST00000636355 CORO2AQ92828 525 aa8.81□□□□□ -1
CLN3-248ENST00000636355 FYTTD1Q96QD9 318 aaKnown RBP8.81□□□□□ -1
CLN3-248ENST00000636355 METRNQ9UJH8 293 aa8.81□□□□□ -1
CLN3-248ENST00000636355 UBE2J1Q9Y385 318 aaPredicted RBP8.81□□□□□ -1
CLN3-248ENST00000636355 MAB21L2Q9Y586 359 aa8.81□□□□□ -1
CLN3-248ENST00000636355 LINC00312Q9Y6C7 94 aa8.81□□□□□ -1
CLN3-248ENST00000636355 IGHV3OR15-7A0A075B7D8 119 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TRBV23-1A0A0A0MS06 115 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TEX13DA0A0J9YY54 714 aaPredicted RBP8.8□□□□□ -1
CLN3-248ENST00000636355 hADV38S2A0JD32 116 aa8.8□□□□□ -1
CLN3-248ENST00000636355 ZNF729A6NN14 1252 aaPredicted RBP8.8□□□□□ -1
CLN3-248ENST00000636355 RNF212BA8MTL3 300 aa8.8□□□□□ -1
CLN3-248ENST00000636355 H0Y980 276 aa8.8□□□□□ -1
CLN3-248ENST00000636355 C15orf65H3BRN8 121 aa8.8□□□□□ -1
CLN3-248ENST00000636355 RP2O75695 350 aa8.8□□□□□ -1
CLN3-248ENST00000636355 NFYAP23511 347 aaPredicted RBP8.8□□□□□ -1
CLN3-248ENST00000636355 GLIPR1P48060 266 aa8.8□□□□□ -1
CLN3-248ENST00000636355 SRSF1Q07955 248 aaKnown RBP eCLIP8.8□□□□□ -1
CLN3-248ENST00000636355 Q3ZCU0 254 aa8.8□□□□□ -1
CLN3-248ENST00000636355 LRRC10Q5BKY1 277 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TCTEX1D1Q8N7M0 179 aa8.8□□□□□ -1
CLN3-248ENST00000636355 OR52M1Q8NGK5 317 aa8.8□□□□□ -1
CLN3-248ENST00000636355 OR13A1Q8NGR1 328 aa8.8□□□□□ -1
CLN3-248ENST00000636355 IL1F10Q8WWZ1 152 aa8.8□□□□□ -1
CLN3-248ENST00000636355 CCL17Q92583 94 aa8.8□□□□□ -1
CLN3-248ENST00000636355 IL22RA2Q969J5 263 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TIMD4Q96H15 378 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TMPRSS13Q9BYE2 586 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms