RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 VWC2LB2RUY7 222 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SRD5A2P31213 254 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 HOXC5Q00444 222 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MEF2BQ02080 365 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 HIST1H1AQ02539 215 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 PMCHL1Q16048 86 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 FAM159AQ6UWV7 190 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SLC35E3Q7Z769 313 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MRPL52Q86TS9 123 aaKnown RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ISCA2Q86U28 154 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 NOXO1Q8NFA2 376 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ANAPC13Q9BS18 74 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM59LQ9UK28 342 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TNFSF18Q9UNG2 199 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 FRG2CA6NGY1 282 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 H3BMM0 161 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 HRO43593 1189 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 CD5LO43866 347 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MRPL58Q14197 206 aaKnown RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SYT14P1Q58G82 188 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF793Q6ZN11 406 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 LSM10Q969L4 123 aaKnown RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 UBE2WQ96B02 151 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MAP6Q96JE9 813 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 PARD6GQ9BYG4 376 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 CHKB-CPT1BH3BT56 60 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 CEACAM4O75871 244 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SMIM13P0DJ93 91 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ERGP11308 486 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MGAT2Q10469 447 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 FAM209BQ5JX69 171 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 MAST2Q6P0Q8 1798 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TEPPQ6URK8 271 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SLCO4C1Q6ZQN7 724 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 CBLL1Q75N03 491 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 OR2Y1Q8NGV0 311 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 SCNM1Q9BWG6 230 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 PRO1933Q9H354 126 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF446Q9NWS9 450 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM129A0AVI4 362 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 HLA-DQA1P01909 254 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ASAH2BP0C7U1 165 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 GABRG2P18507 467 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 C2orf83Q53S99 150 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF818PQ6ZRF7 136 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ZDHHC22Q8N966 263 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 C1orf162Q8NEQ5 155 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-212ENST00000636194 OR4X1Q8NH49 305 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 ABHD14BQ96IU4 210 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 STARD10Q9Y365 291 aa5.34□□□□□ -1.55
SCN1A-212ENST00000636194 A0A1W2PR48 441 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 SRSF10O75494 262 aaKnown RBP5.34□□□□□ -1.56
SCN1A-212ENST00000636194 CST7O76096 145 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 GUCA2AQ02747 115 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 FAM53BQ14153 422 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 AFMIDQ63HM1 303 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 GLDNQ6ZMI3 551 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-212ENST00000636194 RNF165Q6ZSG1 346 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 CCL19Q99731 98 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 G6PC2Q9NQR9 355 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 TBX21Q9UL17 535 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 PKIGQ9Y2B9 76 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 PIK3C2AO00443 1686 aa5.34□□□□□ -1.56
SCN1A-212ENST00000636194 LINC00587B1AMM8 73 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 CHST1O43916 411 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 KBTBD11O94819 623 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 C1QBP02746 253 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 FAM3BP58499 235 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PSG5Q15238 335 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ASTLQ6HA08 431 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SLC48A1Q6P1K1 146 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 C15orf39Q6ZRI6 1047 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 MRPL43Q8N983 215 aaKnown RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 RLN3Q8WXF3 142 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SIGLEC10Q96LC7 697 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 C1orf43Q9BWL3 253 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TRAV8-2A0A0B4J237 113 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 CD74P04233 296 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 LGALS1P09382 135 aaKnown RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SNHG28P0DPA3 235 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 GZMBP10144 247 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PKIAP61925 76 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 IL13RA2Q14627 380 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SSPNQ14714 243 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 MMDQ15546 238 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 FAM78BQ5VT40 261 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TMEM252Q8N6L7 170 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 PAXXQ9BUH6 204 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 EMC6Q9BV81 110 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TRAV30A0A087WSZ9 112 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 H3BP45 60 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 HOXD4P09016 255 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 TFPI2P48307 235 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SEC61GP60059 68 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SRSF4Q08170 494 aaKnown RBP5.33□□□□□ -1.56
SCN1A-212ENST00000636194 OR1P1Q8NH06 330 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 SLC46A2Q9BY10 475 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 ASB1Q9Y576 335 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 FRMPD3Q5JV73 1810 aa5.33□□□□□ -1.56
SCN1A-212ENST00000636194 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms